Literature DB >> 27267452

Improving Synthetic Biology Communication: Recommended Practices for Visual Depiction and Digital Submission of Genetic Designs.

Nathan J Hillson1,2,3,4, Hector A Plahar1,2,4, Jacob Beal5, Ranjini Prithviraj6.   

Abstract

Research is communicated more effectively and reproducibly when articles depict genetic designs consistently and fully disclose the complete sequences of all reported constructs. ACS Synthetic Biology is now providing authors with updated guidance and piloting a new tool and publication workflow that facilitate compliance with these recommended practices and standards for visual representation and data exchange.

Mesh：

Year:  2016        PMID： 27267452     DOI： 10.1021/acssynbio.6b00146

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN： 2161-5063            Impact factor:   5.110


  7 in total

Review 1.  Design Automation in Synthetic Biology.

Authors:  Evan Appleton; Curtis Madsen; Nicholas Roehner; Douglas Densmore
Journal:  Cold Spring Harb Perspect Biol       Date:  2017-04-03       Impact factor: 10.005

2.  Communicating Structure and Function in Synthetic Biology Diagrams.

Authors:  Jacob Beal; Tramy Nguyen; Thomas E Gorochowski; Angel Goñi-Moreno; James Scott-Brown; James Alastair McLaughlin; Curtis Madsen; Benjamin Aleritsch; Bryan Bartley; Shyam Bhakta; Mike Bissell; Sebastian Castillo Hair; Kevin Clancy; Augustin Luna; Nicolas Le Novère; Zach Palchick; Matthew Pocock; Herbert Sauro; John T Sexton; Jeffrey J Tabor; Christopher A Voigt; Zach Zundel; Chris Myers; Anil Wipat
Journal:  ACS Synth Biol       Date:  2019-08-05       Impact factor: 5.110

3.  An automated Design-Build-Test-Learn pipeline for enhanced microbial production of fine chemicals.

Authors:  Pablo Carbonell; Adrian J Jervis; Christopher J Robinson; Cunyu Yan; Mark Dunstan; Neil Swainston; Maria Vinaixa; Katherine A Hollywood; Andrew Currin; Nicholas J W Rattray; Sandra Taylor; Reynard Spiess; Rehana Sung; Alan R Williams; Donal Fellows; Natalie J Stanford; Paul Mulherin; Rosalind Le Feuvre; Perdita Barran; Royston Goodacre; Nicholas J Turner; Carole Goble; George Guoqiang Chen; Douglas B Kell; Jason Micklefield; Rainer Breitling; Eriko Takano; Jean-Loup Faulon; Nigel S Scrutton
Journal:  Commun Biol       Date:  2018-06-08

4.  Better research by efficient sharing: evaluation of free management platforms for synthetic biology designs.

Authors:  Uriel Urquiza-García; Tomasz Zieliński; Andrew J Millar
Journal:  Synth Biol (Oxf)       Date:  2019-06-20

5.  Are synthetic biology standards applicable in everyday research practice?

Authors:  Huseyin Tas; Adam Amara; Miguel E Cueva; Nadine Bongaerts; Alicia Calvo-Villamañán; Samir Hamadache; Konstantinos Vavitsas
Journal:  Microb Biotechnol       Date:  2020-06-21       Impact factor: 5.813

6.  A FAIR-compliant parts catalogue for genome engineering and expression control in Saccharomyces cerevisiae.

Authors:  Vasil D'Ambrosio; Lea G Hansen; Jie Zhang; Emil D Jensen; Dushica Arsovska; Marcos Laloux; Tadas Jakočiūnas; Pernille Hjort; Davide De Lucrezia; Serena Marletta; Jay D Keasling; Michael K Jensen
Journal:  Synth Syst Biotechnol       Date:  2022-02-16

7.  The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering.

Authors:  James Alastair McLaughlin; Jacob Beal; Göksel Mısırlı; Raik Grünberg; Bryan A Bartley; James Scott-Brown; Prashant Vaidyanathan; Pedro Fontanarrosa; Ernst Oberortner; Anil Wipat; Thomas E Gorochowski; Chris J Myers
Journal:  Front Bioeng Biotechnol       Date:  2020-09-11
  7 in total

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