Literature DB >> 27265899

The analytical and biomedical potential of cytosine-rich oligonucleotides: A review.

Anna Dembska1.   

Abstract

Polycytosine DNA strands are often found among natural sequences, including the ends of telomeres, centromeres, and introns or in the regulatory regions of genes. A characteristic feature of oligonucleotides that are rich in cytosine (C-rich) is their ability to associate under acidic conditions to form a tetraplex i-motif consisting of two parallel stranded cytosine-hemiprotonated cytosine (C·C+) base-paired duplexes that are mutually intercalated in an antiparallel orientation. Nanotechnology has been exploiting the advantages of i-motif pH-dependent formation to fabricate nanomachines, nanoswitches, electrodes and intelligent nanosurfaces or nanomaterials. Although a few reviews regarding the structure, properties and applications of i-motifs have been published, this review focuses on recently developed biosensors (e.g., to detect pH, glucose or silver ions) and drug-delivery biomaterials. Furthermore, we have included examples of sensors based on parallel C-rich triplexes and silver nanoclusters (AgNCs) fabricated on cytosine-rich DNA strands. The potential diagnostic and therapeutic applications of this type of material are discussed.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Glucose; Nanocontainers; Sensor; Silver (I) ions; i-motif; pH

Mesh:

Substances:

Year:  2016        PMID: 27265899     DOI: 10.1016/j.aca.2016.05.007

Source DB:  PubMed          Journal:  Anal Chim Acta        ISSN: 0003-2670            Impact factor:   6.558


  15 in total

1.  Probing the Potential Role of Non-B DNA Structures at Yeast Meiosis-Specific DNA Double-Strand Breaks.

Authors:  Rucha Kshirsagar; Krishnendu Khan; Mamata V Joshi; Ramakrishna V Hosur; K Muniyappa
Journal:  Biophys J       Date:  2017-05-23       Impact factor: 4.033

2.  Single-molecule analysis of i-motif within self-assembled DNA duplexes and nanocircles.

Authors:  Anoja Megalathan; Bobby D Cox; Peter D Wilkerson; Anisa Kaur; Kumar Sapkota; Joseph E Reiner; Soma Dhakal
Journal:  Nucleic Acids Res       Date:  2019-08-22       Impact factor: 16.971

3.  Rational design of guiding elements to control folding topology in i-motifs with multiple quadruplexes.

Authors:  Alexander S Minasyan; Srinivas Chakravarthy; Suchitra Vardelly; Mark Joseph; Evgueni E Nesterov; Irina V Nesterova
Journal:  Nanoscale       Date:  2021-05-20       Impact factor: 7.790

4.  Construction of a junction DNA nanostructure and modulation of the junction switching to quadruplexes.

Authors:  Yanwei Cao; Xiaoxuan Xiang; Renjun Pei; Yang Li; Yuting Yan; Xinhua Guo
Journal:  R Soc Open Sci       Date:  2017-12-20       Impact factor: 2.963

5.  Development of fluorescence oligonucleotide probes based on cytosine- and guanine-rich sequences.

Authors:  Anna Dembska; Angelika Świtalska; Agnieszka Fedoruk-Wyszomirska; Bernard Juskowiak
Journal:  Sci Rep       Date:  2020-07-03       Impact factor: 4.379

Review 6.  Recent Advances in Nucleic Acid Targeting Probes and Supramolecular Constructs Based on Pyrene-Modified Oligonucleotides.

Authors:  Olga A Krasheninina; Darya S Novopashina; Evgeny K Apartsin; Alya G Venyaminova
Journal:  Molecules       Date:  2017-11-30       Impact factor: 4.411

7.  i-Motif DNA: structural features and significance to cell biology.

Authors:  Hala Abou Assi; Miguel Garavís; Carlos González; Masad J Damha
Journal:  Nucleic Acids Res       Date:  2018-09-19       Impact factor: 16.971

8.  5'-(CGA) n sequence-assisted pH-controlled assembly of supramolecular DNA nanostructure.

Authors:  Yuting Yan; Yanwei Cao; Chunsheng Xiao; Yang Li; Xiaoxuan Xiang; Xinhua Guo
Journal:  R Soc Open Sci       Date:  2018-08-01       Impact factor: 2.963

9.  Tricky Topology: Persistence of Folded Human Telomeric i-Motif DNA at Ambient Temperature and Neutral pH.

Authors:  Mahmoud A S Abdelhamid; Zoë A E Waller
Journal:  Front Chem       Date:  2020-01-31       Impact factor: 5.221

10.  A dynamic i-motif with a duplex stem-loop in the long terminal repeat promoter of the HIV-1 proviral genome modulates viral transcription.

Authors:  Emanuela Ruggiero; Sara Lago; Primož Šket; Matteo Nadai; Ilaria Frasson; Janez Plavec; Sara N Richter
Journal:  Nucleic Acids Res       Date:  2019-12-02       Impact factor: 16.971

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