Literature DB >> 27257751

Dynamic cell-matrix interactions modulate microbial biofilm and tissue 3D microenvironments.

Hyun Koo1, Kenneth M Yamada2.   

Abstract

Microbial biofilms and most eukaryotic tissues consist of cells embedded in a three-dimensional extracellular matrix. This matrix serves as a scaffold for cell adhesion and a dynamic milieu that provides varying chemical and physical signals to the cells. Besides a vast array of specific molecular components, an extracellular matrix can provide locally heterogeneous microenvironments differing in porosity/diffusion, stiffness, pH, oxygen and metabolites or nutrient levels. Mechanisms of matrix formation, mechanosensing, matrix remodeling, and modulation of cell-cell or cell-matrix interactions and dispersal are being revealed. This perspective article aims to identify such concepts from the fields of biofilm or eukaryotic matrix biology relevant to the other field to help stimulate new questions, approaches, and insights.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27257751      PMCID: PMC5064909          DOI: 10.1016/j.ceb.2016.05.005

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  68 in total

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Authors:  Natalya Doroshenko; Boo Shan Tseng; Robert P Howlin; Jill Deacon; Julian A Wharton; Philipp J Thurner; Brendan F Gilmore; Matthew R Parsek; Paul Stoodley
Journal:  Antimicrob Agents Chemother       Date:  2014-09-29       Impact factor: 5.191

Review 2.  Periodontitis: from microbial immune subversion to systemic inflammation.

Authors:  George Hajishengallis
Journal:  Nat Rev Immunol       Date:  2015-01       Impact factor: 53.106

Review 3.  Organs-on-chips at the frontiers of drug discovery.

Authors:  Eric W Esch; Anthony Bahinski; Dongeun Huh
Journal:  Nat Rev Drug Discov       Date:  2015-03-20       Impact factor: 84.694

4.  Osmotic pressure can regulate matrix gene expression in Bacillus subtilis.

Authors:  Shmuel M Rubinstein; Ilana Kolodkin-Gal; Anna McLoon; Liraz Chai; Roberto Kolter; Richard Losick; David A Weitz
Journal:  Mol Microbiol       Date:  2012-09-07       Impact factor: 3.501

5.  Generation of compartmentalized pressure by a nuclear piston governs cell motility in a 3D matrix.

Authors:  Ryan J Petrie; Hyun Koo; Kenneth M Yamada
Journal:  Science       Date:  2014-08-29       Impact factor: 47.728

Review 6.  Regulation of invadopodia by mechanical signaling.

Authors:  Aron Parekh; Alissa M Weaver
Journal:  Exp Cell Res       Date:  2015-11-04       Impact factor: 3.905

Review 7.  The extracellular matrix: Tools and insights for the "omics" era.

Authors:  Alexandra Naba; Karl R Clauser; Huiming Ding; Charles A Whittaker; Steven A Carr; Richard O Hynes
Journal:  Matrix Biol       Date:  2015-07-08       Impact factor: 11.583

8.  The exopolysaccharide matrix modulates the interaction between 3D architecture and virulence of a mixed-species oral biofilm.

Authors:  Jin Xiao; Marlise I Klein; Megan L Falsetta; Bingwen Lu; Claire M Delahunty; John R Yates; Arne Heydorn; Hyun Koo
Journal:  PLoS Pathog       Date:  2012-04-05       Impact factor: 6.823

9.  Matrix stiffness drives epithelial-mesenchymal transition and tumour metastasis through a TWIST1-G3BP2 mechanotransduction pathway.

Authors:  Spencer C Wei; Laurent Fattet; Jeff H Tsai; Yurong Guo; Vincent H Pai; Hannah E Majeski; Albert C Chen; Robert L Sah; Susan S Taylor; Adam J Engler; Jing Yang
Journal:  Nat Cell Biol       Date:  2015-04-20       Impact factor: 28.824

10.  Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms.

Authors:  Lynne Turnbull; Masanori Toyofuku; Amelia L Hynen; Masaharu Kurosawa; Gabriella Pessi; Nicola K Petty; Sarah R Osvath; Gerardo Cárcamo-Oyarce; Erin S Gloag; Raz Shimoni; Ulrich Omasits; Satoshi Ito; Xinhui Yap; Leigh G Monahan; Rosalia Cavaliere; Christian H Ahrens; Ian G Charles; Nobuhiko Nomura; Leo Eberl; Cynthia B Whitchurch
Journal:  Nat Commun       Date:  2016-04-14       Impact factor: 14.919

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  24 in total

Review 1.  Targeting microbial biofilms: current and prospective therapeutic strategies.

Authors:  Hyun Koo; Raymond N Allan; Robert P Howlin; Paul Stoodley; Luanne Hall-Stoodley
Journal:  Nat Rev Microbiol       Date:  2017-09-25       Impact factor: 60.633

Review 2.  Therapeutic Strategies Targeting Cariogenic Biofilm Microenvironment.

Authors:  Y Liu; Z Ren; G Hwang; H Koo
Journal:  Adv Dent Res       Date:  2018-02

Review 3.  Oral Biofilms: Pathogens, Matrix, and Polymicrobial Interactions in Microenvironments.

Authors:  William H Bowen; Robert A Burne; Hui Wu; Hyun Koo
Journal:  Trends Microbiol       Date:  2017-10-30       Impact factor: 17.079

Review 4.  Biofilms: Formation, Research Models, Potential Targets, and Methods for Prevention and Treatment.

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Review 5.  Klebsiella pneumoniae Biofilms and Their Role in Disease Pathogenesis.

Authors:  Maria Eduarda Souza Guerra; Giulia Destro; Brenda Vieira; Alice S Lima; Lucio Fabio Caldas Ferraz; Anders P Hakansson; Michelle Darrieux; Thiago Rojas Converso
Journal:  Front Cell Infect Microbiol       Date:  2022-05-11       Impact factor: 6.073

Review 6.  Varied solutions to multicellularity: The biophysical and evolutionary consequences of diverse intercellular bonds.

Authors:  Thomas C Day; Pedro Márquez-Zacarías; Pablo Bravo; Aawaz R Pokhrel; Kathryn A MacGillivray; William C Ratcliff; Peter J Yunker
Journal:  Biophys Rev (Melville)       Date:  2022-06-01

Review 7.  Emerging Biomedical Applications of Enzyme-Like Catalytic Nanomaterials.

Authors:  David P Cormode; Lizeng Gao; Hyun Koo
Journal:  Trends Biotechnol       Date:  2017-10-26       Impact factor: 19.536

8.  Antibiofilm activity of Fmoc-phenylalanine against Gram-positive and Gram-negative bacterial biofilms.

Authors:  Himanshi Singh; Avinash Gahane; Virender Singh; Shreya Ghosh; Ashwani Thakur
Journal:  J Antibiot (Tokyo)       Date:  2021-02-26       Impact factor: 2.649

9.  Simultaneous spatiotemporal mapping of in situ pH and bacterial activity within an intact 3D microcolony structure.

Authors:  Geelsu Hwang; Yuan Liu; Dongyeop Kim; Victor Sun; Alejandro Aviles-Reyes; Jessica K Kajfasz; Jose A Lemos; Hyun Koo
Journal:  Sci Rep       Date:  2016-09-08       Impact factor: 4.379

Review 10.  Cariogenic Biofilm: Pathology-Related Phenotypes and Targeted Therapy.

Authors:  Xiuqin Chen; Eric Banan-Mwine Daliri; Akanksha Tyagi; Deog-Hwan Oh
Journal:  Microorganisms       Date:  2021-06-16
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