Literature DB >> 27257670

Application of Two-Dimensional Nuclear Magnetic Resonance for Signal Enhancement by Spectral Integration Using a Large Data Set of Metabolic Mixtures.

Takuma Misawa1,2, Feifei Wei2, Jun Kikuchi1,2,3.   

Abstract

Nuclear magnetic resonance (NMR) spectroscopy has tremendous advantages of minimal sample preparation and interconvertibility of data among different institutions; thus, large data sets are frequently acquired in metabolomics studies. Previously, we used a novel analytical strategy, named signal enhancement by spectral integration (SENSI), to overcome the low signal-to-noise ratio (S/N ratio) problem in (13)C NMR by integration of hundreds of spectra without additional measurements. In this letter, the development of a SENSI 2D method and application to >1000 2D JRES NMR spectra are described. Remarkably, the obtained SENSI 2D spectrum had an approximate 14-fold increase in the S/N ratio and 80-250 additional peaks without any additional measurements. These results suggest that SENSI 2D is a useful method for assigning weak signals and that the use of coefficient of variation values can support the assignment information and extraction of features from the population characteristics among large data sets.

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Year:  2016        PMID: 27257670     DOI: 10.1021/acs.analchem.6b01495

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  11 in total

Review 1.  Recent Advances in NMR-Based Metabolomics.

Authors:  G A Nagana Gowda; Daniel Raftery
Journal:  Anal Chem       Date:  2016-12-02       Impact factor: 6.986

2.  NMR Analysis of Carboxylate Isotopomers of 13C-Metabolites by Chemoselective Derivatization with 15N-Cholamine.

Authors:  Sara Vicente-Muñoz; Penghui Lin; Teresa W-M Fan; Andrew N Lane
Journal:  Anal Chem       Date:  2021-04-21       Impact factor: 8.008

3.  FoodPro: A Web-Based Tool for Evaluating Covariance and Correlation NMR Spectra Associated with Food Processes.

Authors:  Eisuke Chikayama; Ryo Yamashina; Keiko Komatsu; Yuuri Tsuboi; Kenji Sakata; Jun Kikuchi; Yasuyo Sekiyama
Journal:  Metabolites       Date:  2016-10-19

4.  Trans-omics approaches used to characterise fish nutritional biorhythms in leopard coral grouper (Plectropomus leopardus).

Authors:  Miyuki Mekuchi; Kenji Sakata; Tomofumi Yamaguchi; Masahiko Koiso; Jun Kikuchi
Journal:  Sci Rep       Date:  2017-08-24       Impact factor: 4.379

5.  Signal Deconvolution and Noise Factor Analysis Based on a Combination of Time-Frequency Analysis and Probabilistic Sparse Matrix Factorization.

Authors:  Shunji Yamada; Atsushi Kurotani; Eisuke Chikayama; Jun Kikuchi
Journal:  Int J Mol Sci       Date:  2020-04-23       Impact factor: 5.923

6.  Large-Scale Evaluation of Major Soluble Macromolecular Components of Fish Muscle from a Conventional 1H-NMR Spectral Database.

Authors:  Feifei Wei; Minoru Fukuchi; Kengo Ito; Kenji Sakata; Taiga Asakura; Yasuhiro Date; Jun Kikuchi
Journal:  Molecules       Date:  2020-04-23       Impact factor: 4.411

7.  Fish ecotyping based on machine learning and inferred network analysis of chemical and physical properties.

Authors:  Feifei Wei; Kengo Ito; Kenji Sakata; Taiga Asakura; Yasuhiro Date; Jun Kikuchi
Journal:  Sci Rep       Date:  2021-02-12       Impact factor: 4.379

8.  Systemic Homeostasis in Metabolome, Ionome, and Microbiome of Wild Yellowfin Goby in Estuarine Ecosystem.

Authors:  Feifei Wei; Kenji Sakata; Taiga Asakura; Yasuhiro Date; Jun Kikuchi
Journal:  Sci Rep       Date:  2018-02-22       Impact factor: 4.379

9.  Oral Administration of Porphyromonas gingivalis Alters the Gut Microbiome and Serum Metabolome.

Authors:  Tamotsu Kato; Kyoko Yamazaki; Mayuka Nakajima; Yasuhiro Date; Jun Kikuchi; Koji Hase; Hiroshi Ohno; Kazuhisa Yamazaki
Journal:  mSphere       Date:  2018-10-17       Impact factor: 4.389

10.  Deep phenotyping of myalgic encephalomyelitis/chronic fatigue syndrome in Japanese population.

Authors:  Toshimori Kitami; Sanae Fukuda; Tamotsu Kato; Kouzi Yamaguti; Yasuhito Nakatomi; Emi Yamano; Yosky Kataoka; Kei Mizuno; Yuuri Tsuboi; Yasushi Kogo; Harukazu Suzuki; Masayoshi Itoh; Masaki Suimye Morioka; Hideya Kawaji; Haruhiko Koseki; Jun Kikuchi; Yoshihide Hayashizaki; Hiroshi Ohno; Hirohiko Kuratsune; Yasuyoshi Watanabe
Journal:  Sci Rep       Date:  2020-11-16       Impact factor: 4.379

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