Literature DB >> 27256316

Reaction electronic flux and its role in DNA intramolecular proton transfers.

Rocío Durán1,2, Esteban Vöhringer-Martinez2,3, Alejandro Toro-Labbé1,2, Bárbara Herrera4,5.   

Abstract

Proton transfer reactions present a key step in many biological and chemical processes. Here, we focused on the electronic changes in the proton transfer reactions of the four DNA bases. In combination with the previous structural analysis the reaction electronic flux together with local descriptors as the Hirshfeld-I charges allow us to identify chemical events and rationalize the underlying reaction mechanism. Our results show that imine-enamine in adenine and citosyne, and keto-enol tautomerizations in thymine and guanine have different reaction mechanisms. The former involve net structural rearrangements driven by favoured electrostatic interactions between the proton and the acceptor atom whereas the keto-enol tautomerizations require electronic changes reflected in the reaction electronic flux and changes in the NBO bond orders which favour the proton transfer reaction.

Entities:  

Keywords:  Proton transfers; Reaction electronic flux; Reaction force

Mesh:

Substances:

Year:  2016        PMID: 27256316     DOI: 10.1007/s00894-016-2989-x

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  16 in total

1.  Conceptual density functional theory.

Authors:  P Geerlings; F De Proft; W Langenaeker
Journal:  Chem Rev       Date:  2003-05       Impact factor: 60.622

2.  Electrostatic Potentials from Self-Consistent Hirshfeld Atomic Charges.

Authors:  Sofie Van Damme; Patrick Bultinck; Stijn Fias
Journal:  J Chem Theory Comput       Date:  2009-02-10       Impact factor: 6.006

3.  Critical analysis and extension of the Hirshfeld atoms in molecules.

Authors:  Patrick Bultinck; Christian Van Alsenoy; Paul W Ayers; Ramon Carbó-Dorca
Journal:  J Chem Phys       Date:  2007-04-14       Impact factor: 3.488

4.  The role of reaction force and chemical potential in characterizing the mechanism of double proton transfer in the adenine-uracil complex.

Authors:  Bárbara Herrera; Alejandro Toro-Labbé
Journal:  J Phys Chem A       Date:  2007-06-13       Impact factor: 2.781

5.  Parameters for the Description of Transition States.

Authors:  J E Leffler
Journal:  Science       Date:  1953-03-27       Impact factor: 47.728

6.  Reaction electronic flux: a new concept to get insights into reaction mechanisms. Study of model symmetric nucleophilic substitutions.

Authors:  Eleonora Echegaray; Alejandro Toro-Labbé
Journal:  J Phys Chem A       Date:  2008-10-23       Impact factor: 2.781

7.  Density-functional theory of the electronic structure of molecules.

Authors:  R G Parr; W Yang
Journal:  Annu Rev Phys Chem       Date:  1995       Impact factor: 12.703

8.  The mechanism of the interstellar isomerization reaction HOC+ --> HCO+ catalyzed by H2: new insights from the reaction electronic flux.

Authors:  Stefan Vogt-Geisse; Alejandro Toro-Labbé
Journal:  J Chem Phys       Date:  2009-06-28       Impact factor: 3.488

9.  The mean reaction force: a method to study the influence of the environment on reaction mechanisms.

Authors:  Esteban Vöhringer-Martinez; Alejandro Toro-Labbé
Journal:  J Chem Phys       Date:  2011-08-14       Impact factor: 3.488

10.  Assessment of Atomic Charge Models for Gas-Phase Computations on Polypeptides.

Authors:  Toon Verstraelen; Ewald Pauwels; Frank De Proft; Veronique Van Speybroeck; Paul Geerlings; Michel Waroquier
Journal:  J Chem Theory Comput       Date:  2012-01-17       Impact factor: 6.006

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  1 in total

1.  Theoretical analysis of C-F bond cleavage mediated by cob[I]alamin-based structures.

Authors:  D Cortés-Arriagada; A Toro-Labbe; J R Mora; L Rincón; R Mereau; F J Torres
Journal:  J Mol Model       Date:  2017-08-17       Impact factor: 1.810

  1 in total

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