Literature DB >> 27255148

Molecular dynamics simulations and CD spectroscopy reveal hydration-induced unfolding of the intrinsically disordered LEA proteins COR15A and COR15B from Arabidopsis thaliana.

Carlos Navarro-Retamal1, Anne Bremer, Jans Alzate-Morales, Julio Caballero, Dirk K Hincha, Wendy González, Anja Thalhammer.   

Abstract

The LEA (late embryogenesis abundant) proteins COR15A and COR15B from Arabidopsis thaliana are intrinsically disordered under fully hydrated conditions, but obtain α-helical structure during dehydration, which is reversible upon rehydration. To understand this unusual structural transition, both proteins were investigated by circular dichroism (CD) and molecular dynamics (MD) approaches. MD simulations showed unfolding of the proteins in water, in agreement with CD data obtained with both HIS-tagged and untagged recombinant proteins. Mainly intramolecular hydrogen bonds (H-bonds) formed by the protein backbone were replaced by H-bonds with water molecules. As COR15 proteins function in vivo as protectants in leaves partially dehydrated by freezing, unfolding was further assessed under crowded conditions. Glycerol reduced (40%) or prevented (100%) unfolding during MD simulations, in agreement with CD spectroscopy results. H-bonding analysis indicated that preferential exclusion of glycerol from the protein backbone increased stability of the folded state.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27255148     DOI: 10.1039/c6cp02272c

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  12 in total

1.  Folding and Lipid Composition Determine Membrane Interaction of the Disordered Protein COR15A.

Authors:  Carlos Navarro-Retamal; Anne Bremer; Helgi I Ingólfsson; Jans Alzate-Morales; Julio Caballero; Anja Thalhammer; Wendy González; Dirk K Hincha
Journal:  Biophys J       Date:  2018-08-18       Impact factor: 4.033

2.  Intrinsically Disordered Stress Protein COR15A Resides at the Membrane Surface during Dehydration.

Authors:  Anne Bremer; Ben Kent; Thomas Hauß; Anja Thalhammer; Nageshwar R Yepuri; Tamim A Darwish; Christopher J Garvey; Gary Bryant; Dirk K Hincha
Journal:  Biophys J       Date:  2017-08-08       Impact factor: 4.033

3.  Structural disorder and induced folding within two cereal, ABA stress and ripening (ASR) proteins.

Authors:  Karama Hamdi; Edoardo Salladini; Darragh P O'Brien; Sébastien Brier; Alexandre Chenal; Ines Yacoubi; Sonia Longhi
Journal:  Sci Rep       Date:  2017-11-14       Impact factor: 4.379

4.  Similar Yet Different-Structural and Functional Diversity among Arabidopsis thaliana LEA_4 Proteins.

Authors:  Patrick Knox-Brown; Tobias Rindfleisch; Anne Günther; Kim Balow; Anne Bremer; Dirk Walther; Markus S Miettinen; Dirk K Hincha; Anja Thalhammer
Journal:  Int J Mol Sci       Date:  2020-04-17       Impact factor: 5.923

5.  Multiple Genetic Trajectories to Extreme Abiotic Stress Adaptation in Arctic Brassicaceae.

Authors:  Siri Birkeland; A Lovisa S Gustafsson; Anne K Brysting; Christian Brochmann; Michael D Nowak
Journal:  Mol Biol Evol       Date:  2020-07-01       Impact factor: 16.240

6.  Structural properties and enzyme stabilization function of the intrinsically disordered LEA_4 protein TdLEA3 from wheat.

Authors:  Sana Koubaa; Anne Bremer; Dirk K Hincha; Faiçal Brini
Journal:  Sci Rep       Date:  2019-03-06       Impact factor: 4.379

7.  Structural Dynamics of the N-Extension of Cardiac Troponin I Complexed with Troponin C by Site-Directed Spin Labeling Electron Paramagnetic Resonance.

Authors:  Chenchao Zhao; Takayasu Somiya; Shinji Takai; Shoji Ueki; Toshiaki Arata
Journal:  Sci Rep       Date:  2019-10-24       Impact factor: 4.379

8.  Integrative structural dynamics probing of the conformational heterogeneity in synaptosomal-associated protein 25.

Authors:  Nabanita Saikia; Inna S Yanez-Orozco; Ruoyi Qiu; Pengyu Hao; Sergey Milikisiyants; Erkang Ou; George L Hamilton; Keith R Weninger; Tatyana I Smirnova; Hugo Sanabria; Feng Ding
Journal:  Cell Rep Phys Sci       Date:  2021-10-15

Review 9.  Pleiotropic roles of late embryogenesis abundant proteins of Deinococcus radiodurans against oxidation and desiccation.

Authors:  Yingying Liu; Chen Zhang; Zhihan Wang; Min Lin; Jin Wang; Min Wu
Journal:  Comput Struct Biotechnol J       Date:  2021-06-04       Impact factor: 7.271

10.  Molecular Dynamics Ensemble Refinement of Intrinsically Disordered Peptides According to Deconvoluted Spectra from Circular Dichroism.

Authors:  Jacob C Ezerski; Pengzhi Zhang; Nathaniel C Jennings; M Neal Waxham; Margaret S Cheung
Journal:  Biophys J       Date:  2020-02-25       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.