Literature DB >> 27253320

Highly Repeatable Dissolution Dynamic Nuclear Polarization for Heteronuclear NMR Metabolomics.

Aurélien Bornet1, Mickaël Maucourt2,3, Catherine Deborde2,4, Daniel Jacob2,4, Jonas Milani1, Basile Vuichoud1, Xiao Ji1, Jean-Nicolas Dumez5, Annick Moing2,4, Geoffrey Bodenhausen1,6,7,8, Sami Jannin1, Patrick Giraudeau9,10.   

Abstract

At natural (13)C abundance, metabolomics based on heteronuclear NMR is limited by sensitivity. We have recently demonstrated how hyperpolarization by dissolution dynamic nuclear polarization (D-DNP) assisted by cross-polarization (CP) provides a reliable way of enhancing the sensitivity of heteronuclear NMR in dilute mixtures of metabolites. In this Technical Note, we evaluate the precision of this experimental approach, a critical point for applications to metabolomics. The higher the repeatability, the greater the likelihood that one can detect small biologically relevant differences between samples. The average repeatability of our state-of-the-art D-DNP NMR equipment for samples of metabolomic relevance (20 mg dry weight tomato extracts) is 3.6% for signals above the limit of quantification (LOQ) and 6.4% when all the signals above the limit of detection (LOD) are taken into account. This first report on the repeatability of D-DNP highlights the compatibility of the technique with the requirements of metabolomics and confirms its potential as an analytical tool for such applications.

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Year:  2016        PMID: 27253320     DOI: 10.1021/acs.analchem.6b01094

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  9 in total

Review 1.  Recent Advances in NMR-Based Metabolomics.

Authors:  G A Nagana Gowda; Daniel Raftery
Journal:  Anal Chem       Date:  2016-12-02       Impact factor: 6.986

2.  Interfacing Liquid State Hyperpolarization Methods with NMR Instrumentation.

Authors:  Pierce Pham; Ratnamala Mandal; Chang Qi; Christian Hilty
Journal:  J Magn Reson Open       Date:  2022-03-10

Review 3.  Application and methodology of dissolution dynamic nuclear polarization in physical, chemical and biological contexts.

Authors:  Sami Jannin; Jean-Nicolas Dumez; Patrick Giraudeau; Dennis Kurzbach
Journal:  J Magn Reson       Date:  2019-06-04       Impact factor: 2.229

4.  1H NMR Metabolic Profiling of Earthworm (Eisenia fetida) Coelomic Fluid, Coelomocytes, and Tissue: Identification of a New Metabolite-Malylglutamate.

Authors:  Corey M Griffith; Preston B Williams; Luzineide W Tinoco; Meredith M Dinges; Yinsheng Wang; Cynthia K Larive
Journal:  J Proteome Res       Date:  2017-08-16       Impact factor: 4.466

Review 5.  New frontiers in metabolomics: from measurement to insight.

Authors:  Eli Riekeberg; Robert Powers
Journal:  F1000Res       Date:  2017-07-19

6.  NMRProcFlow: a graphical and interactive tool dedicated to 1D spectra processing for NMR-based metabolomics.

Authors:  D Jacob; C Deborde; M Lefebvre; M Maucourt; A Moing
Journal:  Metabolomics       Date:  2017-02-17       Impact factor: 4.290

Review 7.  Recent Advances in Targeted and Untargeted Metabolomics by NMR and MS/NMR Methods.

Authors:  Kerem Bingol
Journal:  High Throughput       Date:  2018-04-18

8.  Hyperpolarized NMR Metabolomics at Natural 13C Abundance.

Authors:  Arnab Dey; Benoît Charrier; Estelle Martineau; Catherine Deborde; Elodie Gandriau; Annick Moing; Daniel Jacob; Dmitry Eshchenko; Marc Schnell; Roberto Melzi; Dennis Kurzbach; Morgan Ceillier; Quentin Chappuis; Samuel F Cousin; James G Kempf; Sami Jannin; Jean-Nicolas Dumez; Patrick Giraudeau
Journal:  Anal Chem       Date:  2020-11-02       Impact factor: 6.986

Review 9.  Metabolomics-Guided Elucidation of Plant Abiotic Stress Responses in the 4IR Era: An Overview.

Authors:  Morena M Tinte; Kekeletso H Chele; Justin J J van der Hooft; Fidele Tugizimana
Journal:  Metabolites       Date:  2021-07-08
  9 in total

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