Literature DB >> 27240466

Novel approaches to map small molecule-target interactions.

Shobhna Kapoor1, Herbert Waldmann2, Slava Ziegler3.   

Abstract

The quest for small molecule perturbators of protein function or a given cellular process lies at the heart of chemical biology and pharmaceutical research. Bioactive compounds need to be extensively characterized in the context of the modulated protein(s) or process(es) in living systems to unravel and confirm their mode of action. A crucial step in this workflow is the identification of the molecular targets for these small molecules, for which a generic methodology is lacking. Herein we summarize recently developed approaches for target identification spurred by advances in omics techniques and chemo- and bioinformatics analysis.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Keywords:  Bioactive small molecules; CETSA, transcriptome sequencing; CRISPR/Cas9; Chem-seq; Profiling; Target identification; Target prediction

Mesh:

Substances:

Year:  2016        PMID: 27240466     DOI: 10.1016/j.bmc.2016.05.020

Source DB:  PubMed          Journal:  Bioorg Med Chem        ISSN: 0968-0896            Impact factor:   3.641


  5 in total

1.  Small molecule target identification using photo-affinity chromatography.

Authors:  Seung-Yong Seo; Timothy W Corson
Journal:  Methods Enzymol       Date:  2019-03-15       Impact factor: 1.600

2.  Exploring Ovarian Cancer Cell Resistance to Rhenium Anticancer Complexes.

Authors:  Sierra C Marker; A Paden King; Robert V Swanda; Brett Vaughn; Eszter Boros; Shu-Bing Qian; Justin J Wilson
Journal:  Angew Chem Int Ed Engl       Date:  2020-05-27       Impact factor: 15.336

3.  Allosteric Antagonist Modulation of TRPV2 by Piperlongumine Impairs Glioblastoma Progression.

Authors:  João Conde; Ruth A Pumroy; Charlotte Baker; Tiago Rodrigues; Ana Guerreiro; Bárbara B Sousa; Marta C Marques; Bernardo P de Almeida; Sohyon Lee; Elvira P Leites; Daniel Picard; Amrita Samanta; Sandra H Vaz; Florian Sieglitz; Maike Langini; Marc Remke; Rafael Roque; Tobias Weiss; Michael Weller; Yuhang Liu; Seungil Han; Francisco Corzana; Vanessa A Morais; Cláudia C Faria; Tânia Carvalho; Panagis Filippakopoulos; Berend Snijder; Nuno L Barbosa-Morais; Vera Y Moiseenkova-Bell; Gonçalo J L Bernardes
Journal:  ACS Cent Sci       Date:  2021-04-14       Impact factor: 14.553

4.  Identifying relationships between unrelated pharmaceutical target proteins on the basis of shared active compounds.

Authors:  Filip Miljković; Ryo Kunimoto; Jürgen Bajorath
Journal:  Future Sci OA       Date:  2017-06-01

5.  Targeting Bacterial Gyrase with Cystobactamid, Fluoroquinolone, and Aminocoumarin Antibiotics Induces Distinct Molecular Signatures in Pseudomonas aeruginosa.

Authors:  Raimo Franke; Heike Overwin; Susanne Häussler; Mark Brönstrup
Journal:  mSystems       Date:  2021-07-13       Impact factor: 6.496

  5 in total

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