| Literature DB >> 27239254 |
Vladimir A Mitkevich1, Irina Yu Petrushanko1, Yuri M Poluektov1, Ksenia M Burnysheva1, Valentina A Lakunina1, Anastasia A Anashkina1, Alexander A Makarov1.
Abstract
Many viruses induce oxidative stress and cause S-glutathionylation of Cys residues of the host and viral proteins. Changes in cell functioning during viral infection may be associated with glutathionylation of a number of key proteins including Na,K-ATPase which creates a gradient of sodium and potassium ions. It was found that Na,K-ATPase α-subunit has a basal glutathionylation which is not abrogated by reducing agent. We have shown that acute hypoxia leads to increase of total glutathionylation level of Na,K-ATPase α-subunit; however, basal glutathionylation of α-subunit increases under prolonged hypoxia only. The role of basal glutathionylation in Na,K-ATPase function remains unclear. Understanding significance of basal glutathionylation is complicated by the fact that there are no X-ray structures of Na,K-ATPase with the identified glutathione molecules. We have analyzed all X-ray structures of the Na,K-ATPase α-subunit from pig kidney and found that there are a number of isolated cavities with unresolved electron density close to the relevant cysteine residues. Analysis of the structures showed that this unresolved density in the structure can be occupied by glutathione associated with cysteine residues. Here, we discuss the role of basal glutathionylation of Na,K-ATPase α-subunit and provide evidence supporting the view that this modification is cotranslational.Entities:
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Year: 2016 PMID: 27239254 PMCID: PMC4863110 DOI: 10.1155/2016/9092328
Source DB: PubMed Journal: Oxid Med Cell Longev ISSN: 1942-0994 Impact factor: 6.543
Figure 1Three-dimensional models of glutathione used for the Na,K-ATPase, GSH modelling. (а) “Linear” model with elongated shape. (b) “Compact” model, structure forms a loop with hydrogen bond formed between the ends of the molecule.
Structures of Na,K-ATPase from pig kidney with resolution better than 4 Å.
| PDB ID | 3B8E | 3KDP | 3WGU | 3WGV | 4HYT |
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| Resolution | 3.50 Å | 3.50 Å | 2.80 Å | 2.80 Å | 3.40 Å |
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| Species, organ | Pig kidney | Pig kidney | Pig kidney | Pig kidney | Pig kidney |
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| Conformation | E2P | — | E1P | E1P with oligomycin | E2P with ouabain |
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| Method | Vapor diffusion and hanging drop | Vapor diffusion | Vapor diffusion and hanging drop | Vapor diffusion and hanging drop | Hanging drop |
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| pH | 7.0 | 7.0 | 6.2 | 6.2 | 6.2 |
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| Temperature | 292.0 K | 292.0 K | 283.0 K | 283.0 K | 292.0 K |
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| Details | 14% PEG 2000 mme, 0.2 M choline chloride, 4% glycerol, 4% MPD, 0.04 M DTT, and 0.1–0.4% beta-DDM | 14% PEG 2000 mme, 0.2 M choline chloride, 4% glycerol, 4% MPD, 0.04 M DTT, and 0.1–0.4% beta-DDM | Na,K-ATPase was incubated with a buffer, 150 mM NaCl, 1 mM AlCl3, 4 mM NaF, 4 mM ADP, 3 mM MgCl2, 2 mM glutathione, and 20 mM MOPS/n-methyl-D-glucamine (NMDG), pH 7.1, and treated with 1.95% (w/v) octaethylene glycol mono-n-dodecyl ether (C12E8) at a mass ratio (C12E8/protein) of 1.3 and separated from the insoluble fraction by centrifugation at 200.000 g and 10 uC; 17.5% PEG 2000 mme, 10% glycerol, 200 mM NaCl, 50 mM MES-NMDG | Na,K-ATPase was incubated with a buffer, 150 mM NaCl, 1 mM AlCl3, 4 mM NaF, 4 mM ADP, 3 mM MgCl2, 2 mM glutathione, and 20 mM MOPS/n-methyl-D-glucamine (NMDG), pH 7.1, with 0.25 mM oligomycin A and treated with 1.95% (w/v) octaethylene glycol mono-n-dodecyl ether (C12E8) at a mass ratio (C12E8/protein) of 1.3 and separated from the insoluble fraction by centrifugation at 200.000 g and 10 uC; 17.5% PEG 2000 mme, 10% glycerol, 200 mM NaCl, 50 mM MES-NMDG | 16-17% PEG 2000 mme, 10% glycerol, 200 mM MgCl2, 100 mM MES-NMDG, pH 6.2, 100 mM urea, 5% |
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| Reference | [ | [ | [ | [ | [ |
Unresolved electron density close to cytosolic cysteine residues in X-ray structures of Na,K-ATPase α-subunit.
| PDB ID/Cys position | 3WGU | 3WGV | 3KDP | 4HYT | 3B8E | S-glutathionylationa |
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| 204, 242 | Densityb | Density | Small size of densityc | Small size of density | Small size of density | + |
| 336 | Distant densityd | Distant density | Density | Density | Distant density | + |
| 349 | Fragmented densitye | Fragmented density | ndf | nd | nd | + |
| 367, 698 | Density | Fragmented density | Distant density | nd | nd | + |
| 421 | nd | nd | Small size of density | nd | nd | − |
| 452, 456 | Density | Fragmented density | Density | Fragmented density | Density | + |
| 457 | Surface | Surface | Surface | Surface | Surface | + |
| 511, 549 | Density | Small size of density | nd | nd | nd | + |
| 656 | Fragmented density | Fragmented density | nd | nd | nd | + |
| 599 | Density | Fragmented density | Density | Density | Density | Not detected |
| 577 | Surface | Surface | Surface | Surface | Surface | Not detected |
aAccording to MALDI-TOF mass spectrometry data in [13].
b“Density”: unresolved density that can fit by glutathione.
c“Small size of density”: unresolved density but too small to fit glutathione.
d“Distant density”: unresolved electron density at a distance of more than 5 Å from Cys (glutathione fits density, but the density is far from the residue).
e“Fragmented”: no intact unresolved density.
f“nd”: no unresolved density close to the residue.
Amino acid composition of porcine Na,K-ATPase α-subunit near Cys residues.
| Cys position | Neighboring amino acid residues |
|---|---|
| 204 | NGCKV |
| 242 | TNCVE |
| 367 | TICSD |
| 698 | EGCQR |
| 452 | LKCIE |
| 456, 457 | ELCCGS |
| 599 | GKCRS |
Cysteine residues with unresolved GSH-like electron density and effect of their substitution by alanine or serine on Na,K-ATPase activity.
| PDB ID/Cys position | 3WGU | 3WGV | 3KDP | 4HYT | 3B8E | Na,K-ATPase activity according to [ |
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| 204 | Density | Density | Small density | Small density | Small density | 49.2 |
| 242 | —a | |||||
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| 367 | Density | Fragmented density | Distant density | nd | nd | 23.4 |
| 698 | 22.9 | |||||
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| 452 | Density | Fragmented density | Density | Fragmented density | Density | 25.3b |
| 456 | ||||||
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| 599 | Density | Fragmented density | Density | Fragmented Density | Density | 43.5 |
Abbreviations and all other details are given in the legend of Table 2.
aCells with Cys 242 Ala or Cys 242 Ser mutant of Na,K-ATPase did not survive under ouabain selective pressure.
bActivity of Cys 452, Cys 456, and Cys 457 Ser mutant of Na,K-ATPase.
Figure 2Part of the Na,K-ATPase α1-subunit near Cys204 and Cys242 (PDB code 3WGU). (a) Unresolved density in the isolated cavity. (b) GSH incorporated into the unresolved density.
Figure 3Part of Na,K-ATPase α1-subunit near Cys452 and Cys456 (PDB code 3WGU). (a) Unresolved density in the isolated cavity. (b) GSH incorporated into the unresolved density.
Figure 4Part of Na,K-ATPase α1-subunit near Cys367 and Cys698 (PDB code 3WGU). (a) Unresolved density in the isolated cavity. (b) GSH incorporated into the unresolved density.
Figure 5Part of Na,K-ATPase α1-subunit near Cys599 (PDB code 3WGU). (a) Unresolved density in the isolated cavity. (b) GSH incorporated into the unresolved density.
RMSD between initial (PDB ID 3WGU) and model structures of Na,K-ATPase with SS bridges between pair of Cys residues (SS RMSD) and between Cys residue and glutathione (Cys-SSG RMSD) after local and global minimization.
| Pairs of Cys residues | SS RMSD, | Glutathionylated Cys | Cys-SSG RMSD, |
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| 204–242 | 0.12 | 204 | 0.09 |
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| 367–698 | 0.14 | 698 | 0.08 |
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| 452–456 | 0.12 | 452 | 0.05 |
aLocal minimization: minimization within a radius of 4.5 Å from the thiol groups of each cysteine residue in MMFF94x force field.
Distance between Cys thiol groups in initial Na,K-ATPase structure (3WGU) and in model structures with glutathionylated Cys residues.
| Pairs of Cys residues | Distance between Cys thiol groups in initial structure, Å | Glutathionylated Cys | Distance between Cys thiol groups in glutathione bound structure, Å |
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| 204–242 | 3.82 | 204 | 3.56 |
| 242 | 3.46 | ||
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| 367–698 | 4.10 | 367 | 5.47 |
| 698 | 5.14 | ||
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| 452–456 | 4.22 | 452 | 3.70 |
| 456 | 5.63 | ||
Figure 6S-glutathionylation of α1-subunit of Na,K-ATPase after acute and prolonged hypoxia before and after TCEP (25 mM) treatment. SC-1 cells were grown either for 3.5 h ((a), (b)) or for 96 h (c), each at 20% and 0.2% pO2. Cell lysates were incubated with ((b), (c)) or without (a) 25 mM TCEP during 30 min at 37°C and α1-subunit of Na,K-ATPase was detected by immunoblotting (IB). (d) α1-Subunit of Na,K-ATPase was immunoprecipitated (IP) from cell lysates by anti-α1 antibodies and glutathionylation was detected with anti-glutathione (anti-GS) antibodies. The original immunoblotting readouts are presented above. Bars represent changes in the S-glutathionylated (GSS-α/α) form of the protein normalized to its total amount. n = 3, mean ± SD. ((e), (f)) Immunoblots of Na,K-ATPase α1-subunit after immunoprecipitation with anti-α1 antibodies and TCEP (25 mM) treatment in denaturing conditions (8 M urea, 8% SDS). (e) Detection of total α1-subunit using anti-α1 antibodies. (f) Detection of glutathionylated α1-subunit using anti-GS antibodies.
Figure 7Schematic representation of Na,K-ATPase glutathionylation depending on intracellular redox status. At normal redox status, the level of GSH is about 100 times higher than GSSG. Under these conditions, during biosynthesis, the proteins are slightly glutathionylated. Redox stress leads to the shift in GSH/GSSG ratio that induces protein glutathionylation. At normal redox status and at redox stress, the basal levels of glutathionylation (glutathionylation of solvent-inaccessible cysteine residues) are different. Subsequent change in the redox status does not affect basal glutathionylation, which demonstrates that the protein “memorizes” a cellular redox state during its biosynthesis. In contrast, glutathionylation of the solvent-accessible cysteine residues (regulatory glutathionylation) depends on the current redox status of cell.