Literature DB >> 27234221

Genome sequence of Candida versatilis and comparative analysis with other yeast.

Lihua Hou1, Lin Guo2, Chunling Wang2, Cong Wang3.   

Abstract

The genome of Candida versatilis was sequenced to understand its characteristics in soy sauce fermentation. The genome size of C. versatilis was 9.7 Mb, the content of G + C was 39.74 %, scaffolds of N50 were 1,229,640 bp in length, containing 4711 gene. There were predicted 269 tRNA genes and 2201 proteins with clear function. Moreover, the genome information of C. versatilis was compared with another salt-tolerant yeast Zygosaccharomyces rouxii and the model organism Saccharomyces cerevisiae. C. versatilis and Z. rouxii genome size was close and both smaller than 12.1 for the Mb of S. cerevisiae. Using the OrthoMCL protein, three genomes were divided into 4663 groups. There were about 3326 homologous proteins in C. versatilis, Z. rouxii and S. cerevisiae.

Entities:  

Keywords:  C. versatilis; Genome sequences; S. cerevisiae; Z. rouxii

Mesh:

Substances:

Year:  2016        PMID: 27234221     DOI: 10.1007/s10295-016-1764-4

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  17 in total

1.  The Gene Ontology (GO) database and informatics resource.

Authors:  M A Harris; J Clark; A Ireland; J Lomax; M Ashburner; R Foulger; K Eilbeck; S Lewis; B Marshall; C Mungall; J Richter; G M Rubin; J A Blake; C Bult; M Dolan; H Drabkin; J T Eppig; D P Hill; L Ni; M Ringwald; R Balakrishnan; J M Cherry; K R Christie; M C Costanzo; S S Dwight; S Engel; D G Fisk; J E Hirschman; E L Hong; R S Nash; A Sethuraman; C L Theesfeld; D Botstein; K Dolinski; B Feierbach; T Berardini; S Mundodi; S Y Rhee; R Apweiler; D Barrell; E Camon; E Dimmer; V Lee; R Chisholm; P Gaudet; W Kibbe; R Kishore; E M Schwarz; P Sternberg; M Gwinn; L Hannick; J Wortman; M Berriman; V Wood; N de la Cruz; P Tonellato; P Jaiswal; T Seigfried; R White
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

3.  Automated benchmarking of peptide-MHC class I binding predictions.

Authors:  Thomas Trolle; Imir G Metushi; Jason A Greenbaum; Yohan Kim; John Sidney; Ole Lund; Alessandro Sette; Bjoern Peters; Morten Nielsen
Journal:  Bioinformatics       Date:  2015-02-25       Impact factor: 6.937

4.  Genome shuffling of Zygosaccharomyces rouxii to accelerate and enhance the flavour formation of soy sauce.

Authors:  Xiaohong Cao; Lihua Hou; Meifang Lu; Chunling Wang; Bin Zeng
Journal:  J Sci Food Agric       Date:  2010-01-30       Impact factor: 3.638

5.  Bioconversion of ferulic acid to 4-vinylguaiacol and 4-ethylguaiacol and of 4-vinylguaiacol to 4-ethylguaiacol by halotolerant yeasts belonging to the genus Candida.

Authors:  Yasuhiko Suezawa; Motofumi Suzuki
Journal:  Biosci Biotechnol Biochem       Date:  2007-04-07       Impact factor: 2.043

6.  OrthoMCL: identification of ortholog groups for eukaryotic genomes.

Authors:  Li Li; Christian J Stoeckert; David S Roos
Journal:  Genome Res       Date:  2003-09       Impact factor: 9.043

7.  Comparative genomics of protoploid Saccharomycetaceae.

Authors:  Jean-Luc Souciet; Bernard Dujon; Claude Gaillardin; Mark Johnston; Philippe V Baret; Paul Cliften; David J Sherman; Jean Weissenbach; Eric Westhof; Patrick Wincker; Claire Jubin; Julie Poulain; Valérie Barbe; Béatrice Ségurens; François Artiguenave; Véronique Anthouard; Benoit Vacherie; Marie-Eve Val; Robert S Fulton; Patrick Minx; Richard Wilson; Pascal Durrens; Géraldine Jean; Christian Marck; Tiphaine Martin; Macha Nikolski; Thomas Rolland; Marie-Line Seret; Serge Casarégola; Laurence Despons; Cécile Fairhead; Gilles Fischer; Ingrid Lafontaine; Véronique Leh; Marc Lemaire; Jacky de Montigny; Cécile Neuvéglise; Agnès Thierry; Isabelle Blanc-Lenfle; Claudine Bleykasten; Julie Diffels; Emilie Fritsch; Lionel Frangeul; Adrien Goëffon; Nicolas Jauniaux; Rym Kachouri-Lafond; Célia Payen; Serge Potier; Lenka Pribylova; Christophe Ozanne; Guy-Franck Richard; Christine Sacerdot; Marie-Laure Straub; Emmanuel Talla
Journal:  Genome Res       Date:  2009-06-12       Impact factor: 9.043

8.  AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints.

Authors:  Mario Stanke; Burkhard Morgenstern
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

9.  Different binding motifs of the celiac disease-associated HLA molecules DQ2.5, DQ2.2, and DQ7.5 revealed by relative quantitative proteomics of endogenous peptide repertoires.

Authors:  Elin Bergseng; Siri Dørum; Magnus Ø Arntzen; Morten Nielsen; Ståle Nygård; Søren Buus; Gustavo A de Souza; Ludvig M Sollid
Journal:  Immunogenetics       Date:  2014-12-12       Impact factor: 2.846

10.  Functional redundancy in the nuclear compartmentalization of the late-replicating genome.

Authors:  Tobias Ragoczy; Agnes Telling; David Scalzo; Charles Kooperberg; Mark Groudine
Journal:  Nucleus       Date:  2014       Impact factor: 4.197

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  2 in total

1.  Can Interspecies Hybrid Zygosaccharomyces rouxii Produce an Allohaploid Gamete?

Authors:  Jun Watanabe; Kenji Uehara; Yuichiro Tsukioka
Journal:  Appl Environ Microbiol       Date:  2017-12-15       Impact factor: 4.792

2.  Austrian Raw-Milk Hard-Cheese Ripening Involves Successional Dynamics of Non-Inoculated Bacteria and Fungi.

Authors:  Narciso M Quijada; Stephan Schmitz-Esser; Benjamin Zwirzitz; Christian Guse; Cameron R Strachan; Martin Wagner; Stefanie U Wetzels; Evelyne Selberherr; Monika Dzieciol
Journal:  Foods       Date:  2020-12-11
  2 in total

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