Literature DB >> 27230684

The carrot genome sequence brings colors out of the dark.

Jordi Garcia-Mas1,2, Manuel Rodriguez-Concepcion1.   

Abstract

The genome sequence of carrot (Daucus carota L.) is the first completed for an Apiaceae species, furthering knowledge of the evolution of the important euasterid II clade. Analyzing the whole-genome sequence allowed for the identification of a gene that may regulate the accumulation of carotenoids in the root.

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Year:  2016        PMID： 27230684     DOI： 10.1038/ng.3574

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


  10 in total

1.  Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years.

Authors:  Michael S Barker; Nolan C Kane; Marta Matvienko; Alexander Kozik; Richard W Michelmore; Steven J Knapp; Loren H Rieseberg
Journal:  Mol Biol Evol       Date:  2008-08-26       Impact factor: 16.240

2.  Light-dependent changes in plastid differentiation influence carotenoid gene expression and accumulation in carrot roots.

Authors:  Paulina Fuentes; Lorena Pizarro; Juan Camilo Moreno; Michael Handford; Manuel Rodriguez-Concepcion; Claudia Stange
Journal:  Plant Mol Biol       Date:  2012-03-18       Impact factor: 4.076

Review 3.  Plant genome sequencing - applications for crop improvement.

Authors:  Marie E Bolger; Bernd Weisshaar; Uwe Scholz; Nils Stein; Björn Usadel; Klaus F X Mayer
Journal:  Curr Opin Biotechnol       Date:  2013-09-21       Impact factor: 9.740

4.  A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.

Authors:  Massimo Iorizzo; Shelby Ellison; Douglas Senalik; Peng Zeng; Pimchanok Satapoomin; Jiaying Huang; Megan Bowman; Marina Iovene; Walter Sanseverino; Pablo Cavagnaro; Mehtap Yildiz; Alicja Macko-Podgórni; Emilia Moranska; Ewa Grzebelus; Dariusz Grzebelus; Hamid Ashrafi; Zhijun Zheng; Shifeng Cheng; David Spooner; Allen Van Deynze; Philipp Simon
Journal:  Nat Genet       Date:  2016-05-09       Impact factor: 38.330

5.  Carotenoid crystal formation in Arabidopsis and carrot roots caused by increased phytoene synthase protein levels.

Authors:  Dirk Maass; Jacobo Arango; Florian Wüst; Peter Beyer; Ralf Welsch
Journal:  PLoS One       Date:  2009-07-28       Impact factor: 3.240

6.  Genetic structure and domestication of carrot (Daucus carota subsp. sativus) (Apiaceae).

Authors:  Massimo Iorizzo; Douglas A Senalik; Shelby L Ellison; Dariusz Grzebelus; Pablo F Cavagnaro; Charlotte Allender; Johanne Brunet; David M Spooner; Allen Van Deynze; Philipp W Simon
Journal:  Am J Bot       Date:  2013-04-17       Impact factor: 3.844

Review 7.  Biosynthesis of carotenoids in carrot: an underground story comes to light.

Authors:  Manuel Rodriguez-Concepcion; Claudia Stange
Journal:  Arch Biochem Biophys       Date:  2013-07-19       Impact factor: 4.013

8.  De novo genome assembly of the economically important weed horseweed using integrated data from multiple sequencing platforms.

Authors:  Yanhui Peng; Zhao Lai; Thomas Lane; Madhugiri Nageswara-Rao; Miki Okada; Marie Jasieniuk; Henriette O'Geen; Ryan W Kim; R Douglas Sammons; Loren H Rieseberg; C Neal Stewart
Journal:  Plant Physiol       Date:  2014-09-10       Impact factor: 8.340

9.  Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary.

Authors:  Kevin Vanneste; Guy Baele; Steven Maere; Yves Van de Peer
Journal:  Genome Res       Date:  2014-05-16       Impact factor: 9.043

10.  The genome sequence of the outbreeding globe artichoke constructed de novo incorporating a phase-aware low-pass sequencing strategy of F1 progeny.

Authors:  Davide Scaglione; Sebastian Reyes-Chin-Wo; Alberto Acquadro; Lutz Froenicke; Ezio Portis; Christopher Beitel; Matteo Tirone; Rosario Mauro; Antonino Lo Monaco; Giovanni Mauromicale; Primetta Faccioli; Luigi Cattivelli; Loren Rieseberg; Richard Michelmore; Sergio Lanteri
Journal:  Sci Rep       Date:  2016-01-20       Impact factor: 4.379
  10 in total

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