Literature DB >> 27229622

Lateral inhibition-induced pattern formation controlled by the size and geometry of the cell.

Sungrim Seirin Lee1.   

Abstract

Pattern formation in development biology is one of the fundamental processes by which cells change their functions. It is based on the communication of cells via intra- and intercellular dynamics of biochemicals. Thus, the cell is directly involved in biochemical interactions. However, many theoretical approaches describing biochemical pattern formation have usually neglected the cell's role or have simplified the subcellular process without considering cellular aspects despite the cell being the environment where biochemicals interact. On the other hand, recent experimental observations suggest that a change in the physical conditions of cell-to-cell contact can result in a change in cell fate and tissue patterning in a lateral inhibition system. Here we develop a mathematical model by which biochemical dynamics can be directly observed with explicitly expressed cell structure and geometry in higher dimensions, and reconsider pattern formation by lateral inhibition of the Notch-Delta signaling pathway. We explore how the physical characteristic of cell, such as cell geometry or size, influences the biochemical pattern formation in a multi-cellular system. Our results suggest that a property based on cell geometry can be a novel mechanism for symmetry breaking inducing cell asymmetry. We show that cell volume can critically influence cell fate determination and pattern formation at the tissue level, and the surface area of the cell-to-cell contact can directly affect the spatial range of patterning.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Keywords:  Cell geometry; Lateral inhibition; Notch–Delta signaling; Pattern formation

Mesh:

Substances:

Year:  2016        PMID: 27229622     DOI: 10.1016/j.jtbi.2016.05.025

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  7 in total

1.  Designing Spatially Distributed Gene Regulatory Networks To Elicit Contrasting Patterns.

Authors:  Mika Tei; Melinda Liu Perkins; Justin Hsia; Murat Arcak; Adam Paul Arkin
Journal:  ACS Synth Biol       Date:  2018-12-24       Impact factor: 5.110

2.  Mathematical-model-guided development of full-thickness epidermal equivalent.

Authors:  Junichi Kumamoto; Shinobu Nakanishi; Mio Makita; Masaaki Uesaka; Yusuke Yasugahira; Yasuaki Kobayashi; Masaharu Nagayama; Sumiko Denda; Mitsuhiro Denda
Journal:  Sci Rep       Date:  2018-12-20       Impact factor: 4.379

Review 3.  Asymmetric cell division from a cell to cells: Shape, length, and location of polarity domain.

Authors:  Sungrim Seirin-Lee
Journal:  Dev Growth Differ       Date:  2020-03-02       Impact factor: 2.053

4.  The extra-embryonic space and the local contour are crucial geometric constraints regulating cell arrangement.

Authors:  Sungrim Seirin-Lee; Kazunori Yamamoto; Akatsuki Kimura
Journal:  Development       Date:  2022-05-12       Impact factor: 6.862

5.  The impact of serum-free culture on HEK293 cells: From the establishment of suspension and adherent serum-free adaptation cultures to the investigation of growth and metabolic profiles.

Authors:  Mi Jang; Ellen Sofie Pete; Per Bruheim
Journal:  Front Bioeng Biotechnol       Date:  2022-09-06

6.  Long time behavior and stable patterns in high-dimensional polarity models of asymmetric cell division.

Authors:  Yoshihisa Morita; Sungrim Seirin-Lee
Journal:  J Math Biol       Date:  2021-06-07       Impact factor: 2.259

7.  An agent-based model of the Notch signaling pathway elucidates three levels of complexity in the determination of developmental patterning.

Authors:  Elaine R Reynolds; Ryan Himmelwright; Christopher Sanginiti; Jeffrey O Pfaffmann
Journal:  BMC Syst Biol       Date:  2019-01-14
  7 in total

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