Literature DB >> 27226614

Sulfur Denitrosylation by an Engineered Trx-like DsbG Enzyme Identifies Nucleophilic Cysteine Hydrogen Bonds as Key Functional Determinant.

Céline Lafaye1, Inge Van Molle2, Veronica Tamu Dufe3, Khadija Wahni2, Ariane Boudier4, Pierre Leroy4, Jean-François Collet5, Joris Messens6.   

Abstract

Exposure of bacteria to NO results in the nitrosylation of cysteine thiols in proteins and low molecular weight thiols such as GSH. The cells possess enzymatic systems that catalyze the denitrosylation of these modified sulfurs. An important player in these systems is thioredoxin (Trx), a ubiquitous, cytoplasmic oxidoreductase that can denitrosylate proteins in vivo and S-nitrosoglutathione (GSNO) in vitro However, a periplasmic or extracellular denitrosylase has not been identified, raising the question of how extracytoplasmic proteins are repaired after nitrosative damage. In this study, we tested whether DsbG and DsbC, two Trx family proteins that function in reducing pathways in the Escherichia coli periplasm, also possess denitrosylating activity. Both DsbG and DsbC are poorly reactive toward GSNO. Moreover, DsbG is unable to denitrosylate its specific substrate protein, YbiS. Remarkably, by borrowing the CGPC active site of E. coli Trx-1 in combination with a T200M point mutation, we transformed DsbG into an enzyme highly reactive toward GSNO and YbiS. The pKa of the nucleophilic cysteine, as well as the redox and thermodynamic properties of the engineered DsbG are dramatically changed and become similar to those of E. coli Trx-1. X-ray structural insights suggest that this results from a loss of two direct hydrogen bonds to the nucleophilic cysteine sulfur in the DsbG mutant. Our results highlight the plasticity of the Trx structural fold and reveal that the subtle change of the number of hydrogen bonds in the active site of Trx-like proteins is the key factor that thermodynamically controls reactivity toward nitrosylated compounds.
© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  S-nitrosylation; antioxidant; bacteria; bioengineering; crystal structure; reactive nitrogen species (RNS); redox regulation; thiol; thioredoxin

Mesh:

Substances:

Year:  2016        PMID: 27226614      PMCID: PMC4946920          DOI: 10.1074/jbc.M116.729426

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  42 in total

1.  Dehydration converts DsbG crystal diffraction from low to high resolution.

Authors:  Begoña Heras; Melissa A Edeling; Karl A Byriel; Alun Jones; Satish Raina; Jennifer L Martin
Journal:  Structure       Date:  2003-02       Impact factor: 5.006

2.  Mimicking the active site of protein disulfide-isomerase by substitution of proline 34 in Escherichia coli thioredoxin.

Authors:  G Krause; J Lundström; J L Barea; C Pueyo de la Cuesta; A Holmgren
Journal:  J Biol Chem       Date:  1991-05-25       Impact factor: 5.157

3.  Laboratory evolution of one disulfide isomerase to resemble another.

Authors:  Annie Hiniker; Guoping Ren; Begoña Heras; Ying Zheng; Stephanie Laurinec; Richard W Jobson; Jeanne A Stuckey; Jennifer L Martin; James C A Bardwell
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-03       Impact factor: 11.205

Review 4.  Regulation of protein function and signaling by reversible cysteine S-nitrosylation.

Authors:  Neal Gould; Paschalis-Thomas Doulias; Margarita Tenopoulou; Karthik Raju; Harry Ischiropoulos
Journal:  J Biol Chem       Date:  2013-07-16       Impact factor: 5.157

Review 5.  Nitrosothiols in bacterial pathogens and pathogenesis.

Authors:  Jay R Laver; Samantha McLean; Lesley A H Bowman; Laura J Harrison; Robert C Read; Robert K Poole
Journal:  Antioxid Redox Signal       Date:  2012-08-22       Impact factor: 8.401

6.  Convenient colorimetric and fluorometric assays for S-nitrosothiols.

Authors:  J A Cook; S Y Kim; D Teague; M C Krishna; R Pacelli; J B Mitchell; Y Vodovotz; R W Nims; D Christodoulou; A M Miles; M B Grisham; D A Wink
Journal:  Anal Biochem       Date:  1996-07-01       Impact factor: 3.365

7.  How thioredoxin can reduce a buried disulphide bond.

Authors:  Joris Messens; Inge Van Molle; Peter Vanhaesebrouck; Maya Limbourg; Karolien Van Belle; Khadija Wahni; José C Martins; Remy Loris; Lode Wyns
Journal:  J Mol Biol       Date:  2004-06-04       Impact factor: 5.469

8.  Towards automated crystallographic structure refinement with phenix.refine.

Authors:  Pavel V Afonine; Ralf W Grosse-Kunstleve; Nathaniel Echols; Jeffrey J Headd; Nigel W Moriarty; Marat Mustyakimov; Thomas C Terwilliger; Alexandre Urzhumtsev; Peter H Zwart; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-03-16

9.  Characterization of DsbC, a periplasmic protein of Erwinia chrysanthemi and Escherichia coli with disulfide isomerase activity.

Authors:  V E Shevchik; G Condemine; J Robert-Baudouy
Journal:  EMBO J       Date:  1994-04-15       Impact factor: 11.598

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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