Literature DB >> 27226590

Topology and Structure/Function Correlation of Ring- and Gate-forming Domains in the Dynamic Secretin Complex of Thermus thermophilus.

Ralf Salzer1, Edoardo D'Imprima2, Vicki A M Gold2, Ilona Rose1, Moritz Drechsler1, Janet Vonck2, Beate Averhoff3.   

Abstract

Secretins are versatile outer membrane pores used by many bacteria to secrete proteins, toxins, or filamentous phages; extrude type IV pili (T4P); or take up DNA. Extrusion of T4P and natural transformation of DNA in the thermophilic bacterium Thermus thermophilus requires a unique secretin complex comprising six stacked rings, a membrane-embedded cone structure, and two gates that open and close a central channel. To investigate the role of distinct domains in ring and gate formation, we examined a set of deletion derivatives by cryomicroscopy techniques. Here we report that maintaining the N0 ring in the deletion derivatives led to stable PilQ complexes. Analyses of the variants unraveled that an N-terminal domain comprising a unique βββαβ fold is essential for the formation of gate 2. Furthermore, we identified four βαββα domains essential for the formation of the N2 to N5 rings. Mutant studies revealed that deletion of individual ring domains significantly reduces piliation. The N1, N2, N4, and N5 deletion mutants were significantly impaired in T4P-mediated twitching motility, whereas the motility of the N3 mutant was comparable with that of wild-type cells. This indicates that the deletion of the N3 ring leads to increased pilus dynamics, thereby compensating for the reduced number of pili of the N3 mutant. All mutants exhibit a wild-type natural transformation phenotype, leading to the conclusion that DNA uptake is independent of functional T4P.
© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  EM; Thermus thermophilus; electron cryotomography; natural transformation; protein domain; protein folding; ring and gate forming domains; secretin; structure/function; type IV pili

Mesh:

Substances:

Year:  2016        PMID: 27226590      PMCID: PMC4938169          DOI: 10.1074/jbc.M116.724153

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  42 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Structure and oligomerization of the PilC type IV pilus biogenesis protein from Thermus thermophilus.

Authors:  Vijaykumar Karuppiah; Darin Hassan; Muhammad Saleem; Jeremy P Derrick
Journal:  Proteins       Date:  2010-07

3.  The Thermus thermophilus comEA/comEC operon is associated with DNA binding and regulation of the DNA translocator and type IV pili.

Authors:  Ralf Salzer; Timo Kern; Friederike Joos; Beate Averhoff
Journal:  Environ Microbiol       Date:  2015-04-08       Impact factor: 5.491

4.  Identification, subcellular localization and functional interactions of PilMNOWQ and PilA4 involved in transformation competency and pilus biogenesis in the thermophilic bacterium Thermus thermophilus HB27.

Authors:  Judit Rumszauer; Cornelia Schwarzenlander; Beate Averhoff
Journal:  FEBS J       Date:  2006-07       Impact factor: 5.542

5.  The DNA uptake ATPase PilF of Thermus thermophilus: a reexamination of the zinc content.

Authors:  Ralf Salzer; Martin Herzberg; Dietrich H Nies; Goran Biuković; Gerhard Grüber; Volker Müller; Beate Averhoff
Journal:  Extremophiles       Date:  2013-05-28       Impact factor: 2.395

6.  The extra-membranous domains of the competence protein HofQ show DNA binding, flexibility and a shared fold with type I KH domains.

Authors:  Michael Tarry; Mari Jääskeläinen; Annamari Paino; Heidi Tuominen; Riikka Ihalin; Martin Högbom
Journal:  J Mol Biol       Date:  2011-04-20       Impact factor: 5.469

7.  Crystal structure of the N-terminal domain of the secretin GspD from ETEC determined with the assistance of a nanobody.

Authors:  Konstantin V Korotkov; Els Pardon; Jan Steyaert; Wim G J Hol
Journal:  Structure       Date:  2009-02-13       Impact factor: 5.006

Review 8.  Exceptionally widespread nanomachines composed of type IV pilins: the prokaryotic Swiss Army knives.

Authors:  Jamie-Lee Berry; Vladimir Pelicic
Journal:  FEMS Microbiol Rev       Date:  2014-12-04       Impact factor: 16.408

9.  Structure of a type IV pilus machinery in the open and closed state.

Authors:  Vicki A M Gold; Ralf Salzer; Beate Averhoff; Werner Kühlbrandt
Journal:  Elife       Date:  2015-05-21       Impact factor: 8.140

10.  RELION: implementation of a Bayesian approach to cryo-EM structure determination.

Authors:  Sjors H W Scheres
Journal:  J Struct Biol       Date:  2012-09-19       Impact factor: 2.867

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  5 in total

1.  Cryo-EM structure of the bifunctional secretin complex of Thermus thermophilus.

Authors:  Edoardo D'Imprima; Ralf Salzer; Ramachandra M Bhaskara; Ricardo Sánchez; Ilona Rose; Lennart Kirchner; Gerhard Hummer; Werner Kühlbrandt; Janet Vonck; Beate Averhoff
Journal:  Elife       Date:  2017-12-27       Impact factor: 8.140

2.  Protein denaturation at the air-water interface and how to prevent it.

Authors:  Edoardo D'Imprima; Davide Floris; Mirko Joppe; Ricardo Sánchez; Martin Grininger; Werner Kühlbrandt
Journal:  Elife       Date:  2019-04-01       Impact factor: 8.140

Review 3.  Natural transformation in Gram-negative bacteria thriving in extreme environments: from genes and genomes to proteins, structures and regulation.

Authors:  Beate Averhoff; Lennart Kirchner; Katharina Pfefferle; Deniz Yaman
Journal:  Extremophiles       Date:  2021-09-20       Impact factor: 2.395

4.  Cryo-EM analysis of the T3S injectisome reveals the structure of the needle and open secretin.

Authors:  J Hu; L J Worrall; C Hong; M Vuckovic; C E Atkinson; N Caveney; Z Yu; N C J Strynadka
Journal:  Nat Commun       Date:  2018-09-21       Impact factor: 14.919

5.  Cryo-electron microscopy reveals two distinct type IV pili assembled by the same bacterium.

Authors:  Alexander Neuhaus; Muniyandi Selvaraj; Ralf Salzer; Julian D Langer; Kerstin Kruse; Lennart Kirchner; Kelly Sanders; Bertram Daum; Beate Averhoff; Vicki A M Gold
Journal:  Nat Commun       Date:  2020-05-06       Impact factor: 14.919

  5 in total

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