Literature DB >> 27225461

Purification, crystallization, and preliminary X-ray crystallographic analysis of the Group III chaperonin from Carboxydothermus hydrogenoformans.

Young Jun An1, Sara E Rowland2,3, Frank T Robb2,3,4, Sun-Shin Cha5.   

Abstract

Chaperonins (CPNs) are megadalton sized ATP-dependent nanomachines that facilitate protein folding through complex cycles of complex allosteric articulation. They consist of two back-to-back stacked multisubunit rings. CPNs are usually classified into Group I and Group II. Here, we report the crystallization of both the AMPPNP (an ATP analogue) and ADP bound forms of a novel CPN, classified as belonging to a third Group, recently discovered in the extreme thermophile Carboxydothermus hydrogenoformans. Crystals of the two forms were grown by the vapor batch crystallization method at 295 K. Crystals of the Ch-CPN/AMPPNP complex diffracted to 3.0 Å resolution and belonged to the space group P422, with unit-cell parameters a = b = 186.166, c = 160.742 Å. Assuming the presence of four molecules in the asymmetric unit, the solvent content was estimated to be about 60.02%. Crystals of the Ch-CPN/ADP complex diffracted to 4.0 Å resolution and belonged to the space group P4212, with unit-cell parameters a = b = 209.780, c = 169.813Å. Assuming the presence of four molecules in the asymmetric unit, the solvent content was estimated to be about 70.19%.

Entities:  

Keywords:  AT-Pfueled nanomachine; Group III chaperonins; crystallization; protein folding

Mesh:

Substances:

Year:  2016        PMID: 27225461     DOI: 10.1007/s12275-016-6089-5

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  21 in total

1.  A cytoplasmic chaperonin that catalyzes beta-actin folding.

Authors:  Y Gao; J O Thomas; R L Chow; G H Lee; N J Cowan
Journal:  Cell       Date:  1992-06-12       Impact factor: 41.582

2.  Crystal structures of a group II chaperonin reveal the open and closed states associated with the protein folding cycle.

Authors:  Jose H Pereira; Corie Y Ralston; Nicholai R Douglas; Daniel Meyer; Kelly M Knee; Daniel R Goulet; Jonathan A King; Judith Frydman; Paul D Adams
Journal:  J Biol Chem       Date:  2010-06-23       Impact factor: 5.157

Review 3.  Chaperonins: The hunt for the Group II mechanism.

Authors:  Maria Giulia Bigotti; Anthony R Clarke
Journal:  Arch Biochem Biophys       Date:  2008-03-22       Impact factor: 4.013

Review 4.  The Hsp70 and Hsp60 chaperone machines.

Authors:  B Bukau; A L Horwich
Journal:  Cell       Date:  1998-02-06       Impact factor: 41.582

5.  The crystal structure of the asymmetric GroEL-GroES-(ADP)7 chaperonin complex.

Authors:  Z Xu; A L Horwich; P B Sigler
Journal:  Nature       Date:  1997-08-21       Impact factor: 49.962

6.  TCP1 complex is a molecular chaperone in tubulin biogenesis.

Authors:  M B Yaffe; G W Farr; D Miklos; A L Horwich; M L Sternlicht; H Sternlicht
Journal:  Nature       Date:  1992-07-16       Impact factor: 49.962

7.  A novel ATPase complex selectively accumulated upon heat shock is a major cellular component of thermophilic archaebacteria.

Authors:  B M Phipps; A Hoffmann; K O Stetter; W Baumeister
Journal:  EMBO J       Date:  1991-07       Impact factor: 11.598

8.  Evidence for horizontal gene transfer of anaerobic carbon monoxide dehydrogenases.

Authors:  Stephen M Techtmann; Alexander V Lebedinsky; Albert S Colman; Tatyana G Sokolova; Tanja Woyke; Lynne Goodwin; Frank T Robb
Journal:  Front Microbiol       Date:  2012-04-17       Impact factor: 5.640

9.  Regulation of multiple carbon monoxide consumption pathways in anaerobic bacteria.

Authors:  Stephen M Techtmann; Albert S Colman; Michael B Murphy; Wendy S Schackwitz; Lynne A Goodwin; Frank T Robb
Journal:  Front Microbiol       Date:  2011-07-11       Impact factor: 5.640

10.  Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901.

Authors:  Martin Wu; Qinghu Ren; A Scott Durkin; Sean C Daugherty; Lauren M Brinkac; Robert J Dodson; Ramana Madupu; Steven A Sullivan; James F Kolonay; Daniel H Haft; William C Nelson; Luke J Tallon; Kristine M Jones; Luke E Ulrich; Juan M Gonzalez; Igor B Zhulin; Frank T Robb; Jonathan A Eisen
Journal:  PLoS Genet       Date:  2005-11-25       Impact factor: 5.917

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  3 in total

Review 1.  Prokaryotic Chaperonins as Experimental Models for Elucidating Structure-Function Abnormalities of Human Pathogenic Mutant Counterparts.

Authors:  Everly Conway de Macario; Frank T Robb; Alberto J L Macario
Journal:  Front Mol Biosci       Date:  2017-01-09

Review 2.  Bridging human chaperonopathies and microbial chaperonins.

Authors:  Everly Conway de Macario; Masafumi Yohda; Alberto J L Macario; Frank T Robb
Journal:  Commun Biol       Date:  2019-03-15

3.  Structural and mechanistic characterization of an archaeal-like chaperonin from a thermophilic bacterium.

Authors:  Young Jun An; Sara E Rowland; Jung-Hyun Na; Dario Spigolon; Seung Kon Hong; Yeo Joon Yoon; Jung-Hyun Lee; Frank T Robb; Sun-Shin Cha
Journal:  Nat Commun       Date:  2017-10-10       Impact factor: 14.919

  3 in total

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