Literature DB >> 27225389

Evaluation of the genetic parameters and mutation analysis of 22 STR loci in the central Chinese Han population.

Wang Hongdan1,2, Kang Bing3, Su Ning3, He Miao3, Zhang Bo3, Guo Yuxin4,5,6, Zhu Bofeng4,5,6, Liao Shixiu7, Zeng Zhaoshu8.   

Abstract

At present, the Han nationality is China's main ethnic group and also the most populous nation in the world. This is a great resource to study microsatellite mutations and for the study of ethnogeny. The aim of this study is to investigate the genetic polymorphisms and mutations of 22 autosomal STR loci in 2475 individuals from Henan province, China. DNA is amplified and genotyped using PowerPlex™24 system. The gene frequencies, forensic parameters, and the mutation rate of the 22 STR loci are analyzed. A total of 295 alleles are observed in this Henan Han population, and the allelic frequencies ranged from 0.0003 to 0.5036. In order to investigate the genetic relationships between the Henan Han and the other 14 different populations, our present data were compared with previously published data for the same 15 STR loci. The results indicated that the Henan Han had closer genetic relationships the groups including Minnan Han, Maonan, Yi and Guangdong Han groups while the South morocco population, the Moroccan population, the Malay group, and the Uigur stand away from Henan Han. Except of D2S441, D13S317, PentaE, D2S1338, D5S818, TPOX and D19S433, the mutation events are found in the other 15 STR loci. A total of 40 mutation events are observed in the 15 STR loci. The mutation rates are ranged from 0 to 4.85 × 10-3. In this study, 39 mutations are single-step mutations, and only one at FGA comprised two steps. STR mutation is commonly existed in paternity testing, while there are no STR mutation studies of the 22 STR loci in the Henan Han population. It is of great importance in forensic individual discrimination and paternal testing.

Entities:  

Keywords:  Genetic polymorphisms; Mutation rates; PowerPlexTM24 kit; Short tandem repeat (STR)

Mesh:

Year:  2016        PMID: 27225389     DOI: 10.1007/s00414-016-1389-1

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  8 in total

1.  Developmental validation of the PowerPlex 16 HS System: an improved 16-locus fluorescent STR multiplex.

Authors:  Martin G Ensenberger; Jonelle Thompson; Becky Hill; Kristen Homick; Veronica Kearney; Kathleen A Mayntz-Press; Paul Mazur; Amy McGuckian; Jelena Myers; Kelli Raley; Stewart G Raley; Robin Rothove; Jonathan Wilson; Doug Wieczorek; Patricia M Fulmer; Douglas R Storts; Benjamin E Krenke
Journal:  Forensic Sci Int Genet       Date:  2009-11-06       Impact factor: 4.882

2.  Genetic variation analysis of 15 autosomal STR loci of AmpFlSTR Sinofiler PCR Amplification Kit in Henan (central China) Han population.

Authors:  Shuqin Huang; Yunliang Zhu; Xintang Shen; Xiaoping Le; Hongtao Yan
Journal:  Leg Med (Tokyo)       Date:  2010-03-19       Impact factor: 1.376

3.  A new method of STR interpretation using inferential logic--development of a criminal intelligence database.

Authors:  P Gill; A Urquhart; E Millican; N Oldroyd; S Watson; R Sparkes; C P Kimpton
Journal:  Int J Legal Med       Date:  1996       Impact factor: 2.686

4.  DNA recommendations. Further report of the DNA Commission of the ISFH regarding the use of short tandem repeat systems. International Society for Forensic Haemogenetics.

Authors:  W Bär; B Brinkmann; B Budowle; A Carracedo; P Gill; P Lincoln; W Mayr; B Olaisen
Journal:  Int J Legal Med       Date:  1997       Impact factor: 2.686

5.  Mutation rate analysis at 19 autosomal microsatellites.

Authors:  Xiao-Qin Qian; Cai-Yong Yin; Qiang Ji; Kai Li; Han-Ting Fan; Yan-Fang Yu; Fan-Li Bu; Ling-Li Hu; Jian-Wen Wang; Hao-Fang Mu; Steven Haigh; Feng Chen
Journal:  Electrophoresis       Date:  2015-05-15       Impact factor: 3.535

6.  Maternity exclusion with a very high autosomal STRs kinship index.

Authors:  Li Li; Jianye Ge; Suhua Zhang; Jianzhang Guo; Shumin Zhao; Chengtao Li; Hui Tang; Carey Davis; Bruce Budowle; Yiping Hou; Yacheng Liu
Journal:  Int J Legal Med       Date:  2012-03-27       Impact factor: 2.686

Review 7.  Determinants of mutation rate variation in the human germline.

Authors:  Laure Ségurel; Minyoung J Wyman; Molly Przeworski
Journal:  Annu Rev Genomics Hum Genet       Date:  2014-06-05       Impact factor: 8.929

8.  Mutation rate estimation for 15 autosomal STR loci in a large population from Mainland China.

Authors:  Zhuo Zhao; Jie Zhang; Hua Wang; Zhi-Peng Liu; Ming Liu; Yuan Zhang; Li Sun; Hui Zhang
Journal:  Meta Gene       Date:  2015-07-26
  8 in total
  4 in total

1.  Genetic structure and polymorphism analysis of Xinjiang Hui ethnic minority based on 21 STRs.

Authors:  Qiong Lan; Jiangang Chen; Yuxin Guo; Tong Xie; Yating Fang; Xiaoye Jin; Wei Cui; Yongsong Zhou; Bofeng Zhu
Journal:  Mol Biol Rep       Date:  2018-01-25       Impact factor: 2.316

2.  Phylogenic analysis and forensic genetic characterization of Chinese Uyghur group via autosomal multi STR markers.

Authors:  Xiaoye Jin; Yuanyuan Wei; Jiangang Chen; Tingting Kong; Yuling Mu; Yuxin Guo; Qian Dong; Tong Xie; Haotian Meng; Meng Zhang; Jianfei Li; Xiaopeng Li; Bofeng Zhu
Journal:  Oncotarget       Date:  2017-05-18

3.  Estimations of Mutation Rates Depend on Population Allele Frequency Distribution: The Case of Autosomal Microsatellites.

Authors:  Sofia Antão-Sousa; Eduardo Conde-Sousa; Leonor Gusmão; António Amorim; Nádia Pinto
Journal:  Genes (Basel)       Date:  2022-07-14       Impact factor: 4.141

4.  Forensic characteristics and phylogenetic analyses of one branch of Tai-Kadai language-speaking Hainan Hlai (Ha Hlai) via 23 autosomal STRs included in the Huaxia Platinum System.

Authors:  Wenhui Li; Xianwen Wang; Xiehong Wang; Fenfen Wang; Zhengming Du; Fangshu Fu; Wenlong Wu; Shuya Wang; Ziqing Mu; Chunwei Chen; Xiaomin Hu; Jiuyang Ding; Yunle Meng; Pingming Qiu; Haoliang Fan
Journal:  Mol Genet Genomic Med       Date:  2020-08-30       Impact factor: 2.183

  4 in total

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