Literature DB >> 27225188

Expression quantitative trait loci in long non-coding RNA PAX8-AS1 are associated with decreased risk of cervical cancer.

Jing Han1,2, Wen Zhou1, Meiqun Jia1, Juan Wen1, Jie Jiang1, Jufang Shi3, Kai Zhang4, Hongxia Ma1,5, Jibin Liu6, Jiansong Ren3, Min Dai3, Zhibin Hu1,5, Dong Hang7, Ni Li8, Hongbing Shen9,10.   

Abstract

Paired box 8 (PAX8) is a crucial nephric-lineage transcription factor, and its aberrant expression has been detected in various types of cancer including Müllerian carcinomas. PAX8 antisense RNA 1 (PAX8-AS1), a potential regulator of PAX8, contains specific single nucleotide polymorphisms (SNPs) that may represent expression quantitative trait loci (eQTLs) for PAX8. In this study, we hypothesized that these eQTLs SNPs in PAX8-AS1 may influence the risk of cervical cancer. A case-control study of 1486 cervical cancer patients and 1536 cancer-free controls was conducted to identify the associations between two eQTLs SNPs (rs4848320 and rs1110839) and cervical cancer. Logistic regression analyses revealed that variant allele T of rs4848320 (recessive model: adjusted OR = 0.61, 95 % CI = 0.38-0.97, P = 0.027) and G of rs1110839 (additive model: adjusted OR = 0.88, 95 % CI = 0.79-0.99, P = 0.032) were associated with decreased risk of cervical cancer. Moreover, the haplotype containing variant alleles of the two SNPs significantly decreased the risk of cervical cancer compared to the most frequent haplotype (adjusted OR = 0.82, 95 % CI = 0.70-0.95, P = 0.009). These findings indicate that PAX8 eQTLs SNPs may serve as novel susceptibility markers for cervical cancer.

Entities:  

Keywords:  Cervical cancer; LncRNA; PAX8; PAX8-AS1; Single nucleotide polymorphism

Mesh:

Substances:

Year:  2016        PMID: 27225188     DOI: 10.1007/s00438-016-1217-9

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  29 in total

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Authors:  David Tacha; Ding Zhou; Liang Cheng
Journal:  Appl Immunohistochem Mol Morphol       Date:  2011-07

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Review 3.  Lessons and implications from association studies and post-GWAS analyses of cervical cancer.

Authors:  Dan Chen; Ulf Gyllensten
Journal:  Trends Genet       Date:  2014-11-18       Impact factor: 11.639

4.  Genetic variants in HLA-DP/DQ contribute to risk of cervical cancer: a two-stage study in Chinese women.

Authors:  Jie Jiang; Ni Li; Yan Shen; Jibin Liu; Li Liu; Jiangbo Du; Yu Lei; Yang Wen; Lin Yang; Lanwei Guo; Kai Zhang; Fulin Qiang; Sumin Wang; Zhibin Hu; Min Dai; Hongbing Shen
Journal:  Gynecol Oncol       Date:  2013-02-18       Impact factor: 5.482

5.  Efficient growth inhibition of HPV 16 E6-expressing cells by an adenovirus-expressing p53 homologue p73beta.

Authors:  Sanjeev Das; Wafik S El-Deiry; Kumaravel Somasundaram
Journal:  Oncogene       Date:  2003-11-20       Impact factor: 9.867

6.  Low expression of long noncoding XLOC_010588 indicates a poor prognosis and promotes proliferation through upregulation of c-Myc in cervical cancer.

Authors:  Ling-Min Liao; Xiao-Ying Sun; An-Wen Liu; Jian-Bing Wu; Xiao-Ling Cheng; Jia-Xin Lin; Min Zheng; Long Huang
Journal:  Gynecol Oncol       Date:  2014-03-22       Impact factor: 5.482

7.  A genetic variant in long non-coding RNA HULC contributes to risk of HBV-related hepatocellular carcinoma in a Chinese population.

Authors:  Yao Liu; Shandong Pan; Li Liu; Xiangjun Zhai; Jibin Liu; Juan Wen; Yixin Zhang; Jianguo Chen; Hongbing Shen; Zhibin Hu
Journal:  PLoS One       Date:  2012-04-06       Impact factor: 3.240

8.  Expression Quantitative Trait Loci for CARD8 Contributes to Risk of Two Infection-Related Cancers--Hepatocellular Carcinoma and Cervical Cancer.

Authors:  Jian Yin; Juan Wen; Dong Hang; Jing Han; Jie Jiang; Ci Song; Yao Liu; Jibin Liu; Li Liu; Liguo Zhu; Jianguo Chen; Xiangjun Zhai; Shuanghua Xie; Zhibin Hu; Hongbing Shen; Min Dai; Ni Li
Journal:  PLoS One       Date:  2015-07-06       Impact factor: 3.240

9.  PAX8, a human paired box gene: isolation and expression in developing thyroid, kidney and Wilms' tumors.

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Journal:  Development       Date:  1992-11       Impact factor: 6.868

10.  Pax8 has a critical role in epithelial cell survival and proliferation.

Authors:  T Di Palma; M G Filippone; G M Pierantoni; A Fusco; S Soddu; M Zannini
Journal:  Cell Death Dis       Date:  2013-07-18       Impact factor: 8.469

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  16 in total

1.  Long non-coding RNA PAX8-AS1 polymorphisms increase the risk of childhood acute lymphoblastic leukemia.

Authors:  Gholamreza Bahari; Mohammad Hashemi; Majid Naderi; Simin Sadeghi-Bojd; Mohsen Taheri
Journal:  Biomed Rep       Date:  2017-12-13

2.  Exploring the Potential Key IncRNAs with Endometriosis by Construction of a ceRNA Network.

Authors:  Chenglei Gu; Yuanguang Meng; Qingqing Meng; Wensheng Fan; Mingxia Ye; Qian Zhang; Nina Zhang; Lian Li
Journal:  Int J Gen Med       Date:  2021-08-05

3.  Genome-wide analysis of differentially expressed lncRNAs and mRNAs in primary gonadotrophin adenomas by RNA-seq.

Authors:  Jiye Li; Chuzhong Li; Jianpeng Wang; Guidong Song; Zheng Zhao; Haoyuan Wang; Wen Wang; Hailong Li; Zhenye Li; Yazhou Miao; Guilin Li; Yazhuo Zhang
Journal:  Oncotarget       Date:  2017-01-17

4.  Polymorphism in lncRNA AC008392.1 and its interaction with smoking on the risk of lung cancer in a Chinese population.

Authors:  Xiaoting Lv; Zhigang Cui; Hang Li; Juan Li; Zitai Yang; Yanhong Bi; Min Gao; Baosen Zhou; Zhihua Yin
Journal:  Cancer Manag Res       Date:  2018-05-30       Impact factor: 3.989

5.  Integrated analysis of differentially expressed genes and construction of a competing endogenous RNA network in human Huntington neural progenitor cells.

Authors:  Xiaoping Tan; Yang Liu; Taiming Zhang; Shuyan Cong
Journal:  BMC Med Genomics       Date:  2021-02-12       Impact factor: 3.063

6.  Long noncoding RNA BLACAT1 promotes cell proliferation and invasion in human cervical cancer.

Authors:  Dan Shan; Yumin Shang; Tongxiu Hu
Journal:  Oncol Lett       Date:  2018-01-11       Impact factor: 2.967

7.  MiR-196a2 and lung cancer in Chinese non-smoking females: a genetic association study and expression analysis.

Authors:  Zhihua Yin; Zhigang Cui; Yangwu Ren; Lingzi Xia; Hang Li; Baosen Zhou
Journal:  Oncotarget       Date:  2017-08-10

8.  Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.

Authors:  Sara R Rashkin; Rebecca E Graff; Linda Kachuri; Khanh K Thai; Stacey E Alexeeff; Maruta A Blatchins; Taylor B Cavazos; Douglas A Corley; Nima C Emami; Joshua D Hoffman; Eric Jorgenson; Lawrence H Kushi; Travis J Meyers; Stephen K Van Den Eeden; Elad Ziv; Laurel A Habel; Thomas J Hoffmann; Lori C Sakoda; John S Witte
Journal:  Nat Commun       Date:  2020-09-04       Impact factor: 14.919

9.  Polymorphism in lncRNA AC016683.6 and its interaction with smoking exposure on the susceptibility of lung cancer.

Authors:  Juan Li; Hang Li; Xiaoting Lv; Zitai Yang; Min Gao; Yanhong Bi; Ziwei Zhang; Shengli Wang; Zhigang Cui; Baosen Zhou; Zhihua Yin
Journal:  Cancer Cell Int       Date:  2018-07-04       Impact factor: 5.722

Review 10.  Genetics of blood malignancies among Iranian population: an overview.

Authors:  Majid Ghayour-Mobarhan; Amir Sadra Zangouei; Seyed Mohammad Hosseinirad; Majid Mojarrad; Meysam Moghbeli
Journal:  Diagn Pathol       Date:  2020-05-06       Impact factor: 2.644

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