Literature DB >> 27220874

Do Intron and Coding Sequences of Some Human-Mouse Orthologs Evolve as a Single Unit?

Miguel Angel Fuertes1, José Ramón Rodrigo2, Carlos Alonso3.   

Abstract

It has been previously suggested that both the coding and the associated non-coding sequences of some human-mouse orthologs could evolve as a single unit. This letter deals with the observation that between mouse and humans some orthologs change significantly their compositional features as an indication that the molecular evolution is a local process. Moreover, the data shown indicate that the coding and the intron sequences of these orthologs do not evolve independently but instead both undergo a concerted evolution, evolving as a single unit, from a compositional cluster in mouse to a different compositional cluster in human.

Entities:  

Keywords:  Co-evolution; Gene clustering; Molecular evolution; Triplet composon

Mesh:

Year:  2016        PMID: 27220874     DOI: 10.1007/s00239-016-9746-8

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  11 in total

1.  Changes in exon-intron structure during vertebrate evolution affect the splicing pattern of exons.

Authors:  Sahar Gelfman; David Burstein; Osnat Penn; Anna Savchenko; Maayan Amit; Schraga Schwartz; Tal Pupko; Gil Ast
Journal:  Genome Res       Date:  2011-10-05       Impact factor: 9.043

Review 2.  Alternative splicing and evolution: diversification, exon definition and function.

Authors:  Hadas Keren; Galit Lev-Maor; Gil Ast
Journal:  Nat Rev Genet       Date:  2010-04-08       Impact factor: 53.242

3.  Chromatin organization marks exon-intron structure.

Authors:  Schraga Schwartz; Eran Meshorer; Gil Ast
Journal:  Nat Struct Mol Biol       Date:  2009-09       Impact factor: 15.369

4.  Differential GC content between exons and introns establishes distinct strategies of splice-site recognition.

Authors:  Maayan Amit; Maya Donyo; Dror Hollander; Amir Goren; Eddo Kim; Sahar Gelfman; Galit Lev-Maor; David Burstein; Schraga Schwartz; Benny Postolsky; Tal Pupko; Gil Ast
Journal:  Cell Rep       Date:  2012-05-03       Impact factor: 9.423

5.  Introns form compositional clusters in parallel with the compositional clusters of the coding sequences to which they pertain.

Authors:  Miguel A Fuertes; José M Pérez; Emile Zuckerkandl; Carlos Alonso
Journal:  J Mol Evol       Date:  2010-12-04       Impact factor: 2.395

6.  Human coding and noncoding DNA: compositional correlations.

Authors:  O Clay; S Cacciò; S Zoubak; D Mouchiroud; G Bernardi
Journal:  Mol Phylogenet Evol       Date:  1996-02       Impact factor: 4.286

7.  High intron sequence conservation across three mammalian orders suggests functional constraints.

Authors:  Matthew P Hare; Stephen R Palumbi
Journal:  Mol Biol Evol       Date:  2003-04-25       Impact factor: 16.240

8.  Nucleotide frequency variation across human genes.

Authors:  Elizabeth Louie; Jurg Ott; Jacek Majewski
Journal:  Genome Res       Date:  2003-11-12       Impact factor: 9.043

9.  Splicing and the evolution of proteins in mammals.

Authors:  Joanna L Parmley; Araxi O Urrutia; Lukasz Potrzebowski; Henrik Kaessmann; Laurence D Hurst
Journal:  PLoS Biol       Date:  2007-02       Impact factor: 8.029

10.  Patterns of exon-intron architecture variation of genes in eukaryotic genomes.

Authors:  Liucun Zhu; Ying Zhang; Wen Zhang; Sihai Yang; Jian-Qun Chen; Dacheng Tian
Journal:  BMC Genomics       Date:  2009-01-24       Impact factor: 3.969

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  4 in total

1.  Conserved Critical Evolutionary Gene Structures in Orthologs.

Authors:  Miguel A Fuertes; José R Rodrigo; Carlos Alonso
Journal:  J Mol Evol       Date:  2019-02-28       Impact factor: 2.395

2.  A Method for the Annotation of Functional Similarities of Coding DNA Sequences: the Case of a Populated Cluster of Transmembrane Proteins.

Authors:  Miguel Angel Fuertes; José Ramón Rodrigo; Carlos Alonso
Journal:  J Mol Evol       Date:  2016-11-03       Impact factor: 2.395

3.  Evolutionary conserved compositional structures hidden in genomes of the foot-and-mouth disease virus and of the human rhinovirus.

Authors:  Miguel Angel Fuertes; Silvia López-Arguello; Carlos Alonso
Journal:  Sci Rep       Date:  2019-11-12       Impact factor: 4.379

4.  Physicochemical Foundations of Life that Direct Evolution: Chance and Natural Selection are not Evolutionary Driving Forces.

Authors:  Didier Auboeuf
Journal:  Life (Basel)       Date:  2020-01-21
  4 in total

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