Literature DB >> 27215819

Biophysical Insights from Temperature-Dependent Single-Molecule Förster Resonance Energy Transfer.

Erik D Holmstrom1, David J Nesbitt1.   

Abstract

Single-molecule fluorescence microscopy techniques can be used in combination with micrometer length-scale temperature control and Förster resonance energy transfer (FRET) in order to gain detailed information about fundamental biophysical phenomena. In particular, this combination of techniques has helped foster the development of remarkable quantitative tools for studying both time- and temperature-dependent structural kinetics of biopolymers. Over the past decade, multiple research efforts have successfully incorporated precise spatial and temporal control of temperature into single-molecule FRET (smFRET)-based experiments, which have uncovered critical thermodynamic information on a wide range of biological systems such as conformational dynamics of nucleic acids. This review provides an overview of various temperature-dependent smFRET approaches from our laboratory and others, highlighting efforts in which such methods have been successfully applied to studies of single-molecule nucleic acid folding.

Keywords:  nucleic acid folding; single molecule kinetics; thermodynamics; transition state theory

Mesh:

Substances:

Year:  2016        PMID: 27215819     DOI: 10.1146/annurev-physchem-040215-112544

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  5 in total

Review 1.  Protein folding transition path times from single molecule FRET.

Authors:  Hoi Sung Chung; William A Eaton
Journal:  Curr Opin Struct Biol       Date:  2017-11-05       Impact factor: 6.809

2.  Exploring the effects of cosolutes and crowding on the volumetric and kinetic profile of the conformational dynamics of a poly dA loop DNA hairpin: a single-molecule FRET study.

Authors:  Satyajit Patra; Vitor Schuabb; Irena Kiesel; Jim-Marcel Knop; Rosario Oliva; Roland Winter
Journal:  Nucleic Acids Res       Date:  2019-01-25       Impact factor: 16.971

3.  Amino Acid Stabilization of Nucleic Acid Secondary Structure: Kinetic Insights from Single-Molecule Studies.

Authors:  David A Nicholson; Abhigyan Sengupta; Hsuan-Lei Sung; David J Nesbitt
Journal:  J Phys Chem B       Date:  2018-10-22       Impact factor: 2.991

4.  Kinetic Microscale Thermophoresis for Simultaneous Measurement of Binding Affinity and Kinetics.

Authors:  Julian A C Stein; Alan Ianeselli; Dieter Braun
Journal:  Angew Chem Int Ed Engl       Date:  2021-05-11       Impact factor: 15.336

Review 5.  Advances in RNA 3D Structure Modeling Using Experimental Data.

Authors:  Bing Li; Yang Cao; Eric Westhof; Zhichao Miao
Journal:  Front Genet       Date:  2020-10-26       Impact factor: 4.599

  5 in total

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