Literature DB >> 27211514

Histone availability as a strategy to control gene expression.

Félix Prado1, Silvia Jimeno-González1, José C Reyes1.   

Abstract

Histone proteins are main structural components of the chromatin and major determinants of gene regulation. Expression of canonical histone genes is strictly controlled during the cell cycle in order to couple DNA replication with histone deposition. Indeed, reductions in the levels of canonical histones or defects in chromatin assembly cause genetic instability. Early data from yeast demonstrated that severe histone depletion also causes strong gene expression changes. We have recently reported that a moderated depletion of canonical histones in human cells leads to an open chromatin configuration, which in turn increases RNA polymerase II elongation rates and causes pre-mRNA splicing defects. Interestingly, some of the observed defects accompany the scheduled histone depletion that is associated with several senescence and aging processes. Thus, our comparison of induced and naturally-occurring histone depletion processes suggests that a programmed reduction of the level of canonical histones might be a strategy to control gene expression during specific physiological processes.

Entities:  

Keywords:  Aging; DNA damage; RNA splicing; histones; transcription

Mesh:

Substances:

Year:  2016        PMID: 27211514      PMCID: PMC5367251          DOI: 10.1080/15476286.2016.1189071

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  63 in total

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Authors:  Xiaofen Ye; Alexa A Franco; Hidelita Santos; David M Nelson; Paul D Kaufman; Peter D Adams
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2.  A slow RNA polymerase II affects alternative splicing in vivo.

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Journal:  Mol Cell       Date:  2003-08       Impact factor: 17.970

3.  Transcription on nucleosomal templates by RNA polymerase II in vitro: inhibition of elongation with enhancement of sequence-specific pausing.

Authors:  M G Izban; D S Luse
Journal:  Genes Dev       Date:  1991-04       Impact factor: 11.361

4.  Chromatin assembly controls replication fork stability.

Authors:  Marta Clemente-Ruiz; Félix Prado
Journal:  EMBO Rep       Date:  2009-05-22       Impact factor: 8.807

5.  Human aging is characterized by focused changes in gene expression and deregulation of alternative splicing.

Authors:  Lorna W Harries; Dena Hernandez; William Henley; Andrew R Wood; Alice C Holly; Rachel M Bradley-Smith; Hanieh Yaghootkar; Ambarish Dutta; Anna Murray; Timothy M Frayling; Jack M Guralnik; Stefania Bandinelli; Andrew Singleton; Luigi Ferrucci; David Melzer
Journal:  Aging Cell       Date:  2011-07-19       Impact factor: 9.304

6.  Regulation of alternative splicing by the core spliceosomal machinery.

Authors:  Arneet L Saltzman; Qun Pan; Benjamin J Blencowe
Journal:  Genes Dev       Date:  2011-02-15       Impact factor: 11.361

7.  Biased chromatin signatures around polyadenylation sites and exons.

Authors:  Noah Spies; Cydney B Nielsen; Richard A Padgett; Christopher B Burge
Journal:  Mol Cell       Date:  2009-10-23       Impact factor: 17.970

8.  Nucleosomes are well positioned in exons and carry characteristic histone modifications.

Authors:  Robin Andersson; Stefan Enroth; Alvaro Rada-Iglesias; Claes Wadelius; Jan Komorowski
Journal:  Genome Res       Date:  2009-08-17       Impact factor: 9.043

9.  Widespread splicing changes in human brain development and aging.

Authors:  Pavel Mazin; Jieyi Xiong; Xiling Liu; Zheng Yan; Xiaoyu Zhang; Mingshuang Li; Liu He; Mehmet Somel; Yuan Yuan; Yi-Ping Phoebe Chen; Na Li; Yuhui Hu; Ning Fu; Zhibin Ning; Rong Zeng; Hongyi Yang; Wei Chen; Mikhail Gelfand; Philipp Khaitovich
Journal:  Mol Syst Biol       Date:  2013       Impact factor: 11.429

10.  Defective histone supply causes condensin-dependent chromatin alterations, SAC activation and chromosome decatenation impairment.

Authors:  Marina Murillo-Pineda; María J Cabello-Lobato; Marta Clemente-Ruiz; Fernando Monje-Casas; Félix Prado
Journal:  Nucleic Acids Res       Date:  2014-10-09       Impact factor: 16.971

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  9 in total

Review 1.  Zygotic Genome Activation in Vertebrates.

Authors:  David Jukam; S Ali M Shariati; Jan M Skotheim
Journal:  Dev Cell       Date:  2017-08-21       Impact factor: 12.270

Review 2.  Epigenetic regulation in cell senescence.

Authors:  Li-Qin Cheng; Zhu-Qin Zhang; Hou-Zao Chen; De-Pei Liu
Journal:  J Mol Med (Berl)       Date:  2017-09-08       Impact factor: 4.599

3.  Transcriptomics-Based Investigation of Molecular Mechanisms Underlying Apoptosis Induced by ZnO Nanoparticles in Human Diffuse Large B-Cell Lymphoma.

Authors:  Suliman A Alsagaby
Journal:  Int J Nanomedicine       Date:  2022-05-18

Review 4.  Regulation of Replication Fork Advance and Stability by Nucleosome Assembly.

Authors:  Felix Prado; Douglas Maya
Journal:  Genes (Basel)       Date:  2017-01-24       Impact factor: 4.096

5.  Histone depletion prevents telomere fusions in pre-senescent cells.

Authors:  Marta Barrientos-Moreno; Marina Murillo-Pineda; Ana M Muñoz-Cabello; Félix Prado
Journal:  PLoS Genet       Date:  2018-06-07       Impact factor: 5.917

6.  Loss of Atg7 causes chaotic nucleosome assembly of mouse bone marrow CD11b+Ly6G- myeloid cells.

Authors:  Yixuan Fang; Yue Gu; Lei Li; Lingjiang Zhu; Jiawei Qian; Chen Zhao; Li Xu; Wen Wei; Yanhua Du; Na Yuan; Suping Zhang; Ye Yuan; Youjia Xu; Cizhong Jiang; Jianrong Wang
Journal:  Aging (Albany NY)       Date:  2020-11-24       Impact factor: 5.682

7.  Proteomic Analysis of Marinesco-Sjogren Syndrome Fibroblasts Indicates Pro-Survival Metabolic Adaptation to SIL1 Loss.

Authors:  Francesca Potenza; Maria Concetta Cufaro; Linda Di Biase; Valeria Panella; Antonella Di Campli; Anna Giulia Ruggieri; Beatrice Dufrusine; Elena Restelli; Laura Pietrangelo; Feliciano Protasi; Damiana Pieragostino; Vincenzo De Laurenzi; Luca Federici; Roberto Chiesa; Michele Sallese
Journal:  Int J Mol Sci       Date:  2021-11-18       Impact factor: 5.923

8.  The chromatin remodeler ZmCHB101 impacts alternative splicing contexts in response to osmotic stress.

Authors:  Xiaoming Yu; Xinchao Meng; Yutong Liu; Xutong Wang; Tian-Jing Wang; Ai Zhang; Ning Li; Xin Qi; Bao Liu; Zheng-Yi Xu
Journal:  Plant Cell Rep       Date:  2018-11-15       Impact factor: 4.570

Review 9.  Cranial Neural Crest Cells and Their Role in the Pathogenesis of Craniofacial Anomalies and Coronal Craniosynostosis.

Authors:  Erica M Siismets; Nan E Hatch
Journal:  J Dev Biol       Date:  2020-09-09
  9 in total

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