Literature DB >> 2720461

A fast and sensitive multiple sequence alignment algorithm.

M Vingron1, P Argos.   

Abstract

A two-step multiple alignment strategy is presented that allows rapid alignment of a set of homologous sequences and comparison of pre-aligned groups of sequences. Examples are given demonstrating the improvement in the quality of alignments when comparing entire groups instead of single sequences. The modular design of computer programs based on this algorithm allows for storage of aligned sequences and successive alignment of any number of sequences.

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Year:  1989        PMID： 2720461     DOI： 10.1093/bioinformatics/5.2.115

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN： 0266-7061


  25 in total

1.  CRASP: a program for analysis of coordinated substitutions in multiple alignments of protein sequences.

Authors:  Dmitry A Afonnikov; Nikolay A Kolchanov
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

2.  Sequence variability and gene structure at the self-incompatibility locus of Solanum tuberosum.

Authors:  H Kaufmann; F Salamini; R D Thompson
Journal:  Mol Gen Genet       Date:  1991-05

3.  ProbCons: Probabilistic consistency-based multiple sequence alignment.

Authors:  Chuong B Do; Mahathi S P Mahabhashyam; Michael Brudno; Serafim Batzoglou
Journal:  Genome Res       Date:  2005-02       Impact factor: 9.043

4.  The relative inefficiency of sequence weights approaches in determining a nucleotide position weight matrix.

Authors:  Lee A Newberg; Lee Ann McCue; Charles E Lawrence
Journal:  Stat Appl Genet Mol Biol       Date:  2005-06-01

5.  Evolutionary analysis of phycobiliproteins: implications for their structural and functional relationships.

Authors:  Fangqing Zhao; Song Qin
Journal:  J Mol Evol       Date:  2006-07-07       Impact factor: 2.395

6.  Automated assembly of protein blocks for database searching.

Authors:  S Henikoff; J G Henikoff
Journal:  Nucleic Acids Res       Date:  1991-12-11       Impact factor: 16.971

7.  Molecular cloning and structural analysis of genes from Zea mays (L.) coding for members of the ras-related ypt gene family.

Authors:  K Palme; T Diefenthal; M Vingron; C Sander; J Schell
Journal:  Proc Natl Acad Sci U S A       Date:  1992-01-15       Impact factor: 11.205

8.  Structural model of the nucleotide-binding conserved component of periplasmic permeases.

Authors:  C S Mimura; S R Holbrook; G F Ames
Journal:  Proc Natl Acad Sci U S A       Date:  1991-01-01       Impact factor: 11.205

9.  Topology prediction of membrane proteins.

Authors:  B Persson; P Argos
Journal:  Protein Sci       Date:  1996-02       Impact factor: 6.725

10.  Activation of the Rhizobium leguminosarum glnII gene by NtrC is dependent on upstream DNA sequences.

Authors:  E J Patriarca; M Chiurazzi; G Manco; A Riccio; A Lamberti; A De Paolis; M Rossi; R Defez; M Iaccarino
Journal:  Mol Gen Genet       Date:  1992-09
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