Literature DB >> 27198180

A reversible B-A transition of DNA duplexes induced by synthetic cationic copolymers.

Nonoka Yamaguchi1, Yu-Ki Zouzumi, Naohiko Shimada, Shu-Ichi Nakano, Naoki Sugimoto, Atsushi Maruyama, Daisuke Miyoshi.   

Abstract

Although the B-form duplex is the canonical DNA structure, the A-form duplex plays critical roles in controlling gene expression. Here, reversible B-A transitions of DNA duplexes were induced by synthetic cationic and anionic polymers. Thermodynamic analysis demonstrated that the B-A transition was regulated by the dehydration of the DNA duplex caused by polymer binding.

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Year:  2016        PMID: 27198180     DOI: 10.1039/c6cc02237e

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  3 in total

1.  Cationic copolymers that enhance wild-type-specific suppression in BNA-clamp PCR and preferentially increase the T m of fully matched complementary DNA and BNA strands.

Authors:  Ami Tachibana; Nahohiro Fujimura; Minoru Takeuchi; Koji Watanabe; Yoko Teruuchi; Tomoaki Uchiki
Journal:  Biol Methods Protoc       Date:  2022-03-30

2.  C 3-symmetric opioid scaffolds are pH-responsive DNA condensation agents.

Authors:  Natasha McStay; Zara Molphy; Alan Coughlan; Attilio Cafolla; Vickie McKee; Nicholas Gathergood; Andrew Kellett
Journal:  Nucleic Acids Res       Date:  2016-11-28       Impact factor: 16.971

3.  Kinetics of the Conformational Transformation between B- and A-Forms in the Drew-Dickerson Dodecamer.

Authors:  Natalya A Kovaleva; Ivan A Strelnikov; Elena A Zubova
Journal:  ACS Omega       Date:  2020-12-15
  3 in total

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