Literature DB >> 27196505

The bright side of microbial dark matter: lessons learned from the uncultivated majority.

Lindsey Solden1, Karen Lloyd2, Kelly Wrighton3.   

Abstract

Microorganisms are the most diverse and abundant life forms on Earth. Yet, in many environments, only 0.1-1% of them have been cultivated greatly hindering our understanding of the microbial world. However, today cultivation is no longer a requirement for gaining access to information from the uncultivated majority. New genomic information from metagenomics and single cell genomics has provided insights into microbial metabolic cooperation and dependence, generating new avenues for cultivation efforts. Here we summarize recent advances from uncultivated phyla and discuss how this knowledge has influenced our understanding of the topology of the tree of life and metabolic diversity.
Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

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Year:  2016        PMID: 27196505     DOI: 10.1016/j.mib.2016.04.020

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  62 in total

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Review 2.  Xerotolerant bacteria: surviving through a dry spell.

Authors:  Pedro H Lebre; Pieter De Maayer; Don A Cowan
Journal:  Nat Rev Microbiol       Date:  2017-03-20       Impact factor: 60.633

3.  Community members in activated sludge as determined by molecular probe technology.

Authors:  Weihong Xu; Veronica R Brand; Sundari Suresh; Michael A Jensen; Ronald W Davis; Craig S Criddle; Robert P St Onge; Richard W Hyman
Journal:  Water Res       Date:  2019-10-10       Impact factor: 11.236

4.  Meta-omics approaches reveal unique small RNAs exhibited by the uncultured microorganisms dwelling deep-sea hydrothermal sediment in Guaymas Basin.

Authors:  Muhammad Zohaib Nawaz; Fengping Wang
Journal:  Arch Microbiol       Date:  2022-07-06       Impact factor: 2.552

Review 5.  Candidate Phyla Radiation, an Underappreciated Division of the Human Microbiome, and Its Impact on Health and Disease.

Authors:  Sabrina Naud; Ahmad Ibrahim; Camille Valles; Mohamad Maatouk; Fadi Bittar; Maryam Tidjani Alou; Didier Raoult
Journal:  Clin Microbiol Rev       Date:  2022-06-06       Impact factor: 50.129

6.  Recovery of Lutacidiplasmatales archaeal order genomes suggests convergent evolution in Thermoplasmatota.

Authors:  Paul O Sheridan; Yiyu Meng; Tom A Williams; Cécile Gubry-Rangin
Journal:  Nat Commun       Date:  2022-07-15       Impact factor: 17.694

7.  Unveiling microbial interactions in stratified mat communities from a warm saline shallow pond.

Authors:  Aurélien Saghaï; Ana Gutiérrez-Preciado; Philippe Deschamps; David Moreira; Paola Bertolino; Marie Ragon; Purificación López-García
Journal:  Environ Microbiol       Date:  2017-05-10       Impact factor: 5.491

8.  Quantifying and Cataloguing Unknown Sequences within Human Microbiomes.

Authors:  Sejal Modha; David L Robertson; Joseph Hughes; Richard J Orton
Journal:  mSystems       Date:  2022-03-08       Impact factor: 7.324

Review 9.  Diversity, Ecological Role and Biotechnological Potential of Antarctic Marine Fungi.

Authors:  Stefano Varrella; Giulio Barone; Michael Tangherlini; Eugenio Rastelli; Antonio Dell'Anno; Cinzia Corinaldesi
Journal:  J Fungi (Basel)       Date:  2021-05-17

10.  A zero inflated log-normal model for inference of sparse microbial association networks.

Authors:  Vincent Prost; Stéphane Gazut; Thomas Brüls
Journal:  PLoS Comput Biol       Date:  2021-06-18       Impact factor: 4.475

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