Literature DB >> 27186988

GreA and GreB Enhance Expression of Escherichia coli RNA Polymerase Promoters in a Reconstituted Transcription-Translation System.

Lea L de Maddalena1, Henrike Niederholtmeyer1, Matti Turtola2, Zoe N Swank1, Georgiy A Belogurov2, Sebastian J Maerkl1.   

Abstract

Cell-free environments are becoming viable alternatives for implementing biological networks in synthetic biology. The reconstituted cell-free expression system (PURE) allows characterization of genetic networks under defined conditions but its applicability to native bacterial promoters and endogenous genetic networks is limited due to the poor transcription rate of Escherichia coli RNA polymerase in this minimal system. We found that addition of transcription elongation factors GreA and GreB to the PURE system increased transcription rates of E. coli RNA polymerase from sigma factor 70 promoters up to 6-fold and enhanced the performance of a genetic network. Furthermore, we reconstituted activation of natural E. coli promoters controlling flagella biosynthesis by the transcriptional activator FlhDC and sigma factor 28. Addition of GreA/GreB to the PURE system allows efficient expression from natural and synthetic E. coli promoters and characterization of their regulation in minimal and defined reaction conditions, making the PURE system more broadly applicable to study genetic networks and bottom-up synthetic biology.

Entities:  

Keywords:  E. coli RNA polymerase; E. coli promoters; PURE system; bottom-up synthetic biology; cell-free protein synthesis; transcription

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Year:  2016        PMID: 27186988     DOI: 10.1021/acssynbio.6b00017

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  6 in total

Review 1.  Biochemistry of Aminoacyl tRNA Synthetase and tRNAs and Their Engineering for Cell-Free and Synthetic Cell Applications.

Authors:  Ragunathan Bava Ganesh; Sebastian J Maerkl
Journal:  Front Bioeng Biotechnol       Date:  2022-07-01

Review 2.  Cell-free synthetic biology for in vitro prototype engineering.

Authors:  Simon J Moore; James T MacDonald; Paul S Freemont
Journal:  Biochem Soc Trans       Date:  2017-06-15       Impact factor: 5.407

3.  Transcription Elongation Factor GreA Plays a Key Role in Cellular Invasion and Virulence of Francisella tularensis subsp. novicida.

Authors:  Guolin Cui; Jun Wang; Xinyi Qi; Jingliang Su
Journal:  Sci Rep       Date:  2018-05-02       Impact factor: 4.379

Review 4.  Cell-free microcompartmentalised transcription-translation for the prototyping of synthetic communication networks.

Authors:  Emilien Dubuc; Pascal A Pieters; Ardjan J van der Linden; Jan Cm van Hest; Wilhelm Ts Huck; Tom Fa de Greef
Journal:  Curr Opin Biotechnol       Date:  2018-12-26       Impact factor: 10.279

5.  Involvement of Transcription Elongation Factor GreA in Mycobacterium Viability, Antibiotic Susceptibility, and Intracellular Fitness.

Authors:  Siyuan Feng; Yan Liu; Wanfei Liang; Mohamed Abd El-Gawad El-Sayed Ahmed; Zihan Zhao; Cong Shen; Adam P Roberts; Lujie Liang; Liya Liao; Zhijuan Zhong; Zhaowang Guo; Yongqiang Yang; Xin Wen; Hongtao Chen; Guo-Bao Tian
Journal:  Front Microbiol       Date:  2020-03-23       Impact factor: 5.640

Review 6.  Bottom-Up Construction of Complex Biomolecular Systems With Cell-Free Synthetic Biology.

Authors:  Nadanai Laohakunakorn; Laura Grasemann; Barbora Lavickova; Grégoire Michielin; Amir Shahein; Zoe Swank; Sebastian J Maerkl
Journal:  Front Bioeng Biotechnol       Date:  2020-03-24
  6 in total

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