Literature DB >> 27186324

Telomere length measurement by a novel Luminex-based assay: a blinded comparison to Southern blot.

Brandon L Pierce1, Farzana Jasmine2, Shantanu Roy2, Chenan Zhang2, Abraham Aviv3, Steven C Hunt4, Habibul Ahsan5, Muhammad G Kibriya2.   

Abstract

Telomere length (TL) is a potential biomarker of aging and age-related disease risk. We recently published a novel Luminex-based method for high-throughput, low-cost TL measurement. Here we describe a blinded comparison of the Luminex method to Southern blot, the most precise TL measurement method. Luminex and Southern blot measurements for the same 50 DNA samples were taken in two independent laboratories; each sample was measured twice, several months apart. The inter-assay CV for Luminex ranged from 5.5 to 9.1 (depending on CV estimation method), and Southern blot CV from 1.0 to 1.7. Both measures were inversely associated with age. The correlation between the repeated measurements was 0.66 for Luminex and 0.97 for Southern blot. The correlation between Southern blot and Luminex was 0.65 in round 1 and 0.75 in round 2, and the relationship showed no evidence of non-linearity. Our results demonstrate that the Luminex assay is a valid and reproducible method for high-throughput TL measurement. The Luminex assay involves no DNA amplification, which may make Luminex an attractive alternative to PCR-based TL measurement.

Entities:  

Keywords:  Luminex; Southern blot; Telomere length; aging; qPCR; validation

Year:  2016        PMID: 27186324      PMCID: PMC4858612     

Source DB:  PubMed          Journal:  Int J Mol Epidemiol Genet        ISSN: 1948-1756


  16 in total

1.  Random measurement error and regression dilution bias.

Authors:  Jennifer A Hutcheon; Arnaud Chiolero; James A Hanley
Journal:  BMJ       Date:  2010-06-23

2.  Measurement of telomere length by the Southern blot analysis of terminal restriction fragment lengths.

Authors:  Masayuki Kimura; Rivka C Stone; Steven C Hunt; Joan Skurnick; Xiaobin Lu; Xiaojian Cao; Calvin B Harley; Abraham Aviv
Journal:  Nat Protoc       Date:  2010-09-02       Impact factor: 13.491

Review 3.  Telomere length in epidemiology: a biomarker of aging, age-related disease, both, or neither?

Authors:  Jason L Sanders; Anne B Newman
Journal:  Epidemiol Rev       Date:  2013-01-09       Impact factor: 6.222

4.  Improving qPCR telomere length assays: Controlling for well position effects increases statistical power.

Authors:  Dan T A Eisenberg; Christopher W Kuzawa; M Geoffrey Hayes
Journal:  Am J Hum Biol       Date:  2015-03-10       Impact factor: 1.937

5.  The association of telomere length and cancer: a meta-analysis.

Authors:  Ingrid M Wentzensen; Lisa Mirabello; Ruth M Pfeiffer; Sharon A Savage
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2011-04-05       Impact factor: 4.254

6.  Measurement of telomere length: a new assay using QuantiGene chemistry on a Luminex platform.

Authors:  Muhammad G Kibriya; Farzana Jasmine; Shantanu Roy; Habibul Ahsan; Brandon Pierce
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2014-12       Impact factor: 4.254

7.  Telomere length in white blood cell DNA and lung cancer: a pooled analysis of three prospective cohorts.

Authors:  Wei Jie Seow; Richard M Cawthon; Mark P Purdue; Wei Hu; Yu-Tang Gao; Wen-Yi Huang; Stephanie J Weinstein; Bu-Tian Ji; Jarmo Virtamo; H Dean Hosgood; Bryan A Bassig; Xiao-Ou Shu; Qiuyin Cai; Yong-Bing Xiang; Shen Min; Wong-Ho Chow; Sonja I Berndt; Christopher Kim; Unhee Lim; Demetrius Albanes; Neil E Caporaso; Stephen Chanock; Wei Zheng; Nathaniel Rothman; Qing Lan
Journal:  Cancer Res       Date:  2014-05-22       Impact factor: 12.701

Review 8.  Beyond average: potential for measurement of short telomeres.

Authors:  Elsa Vera; Maria A Blasco
Journal:  Aging (Albany NY)       Date:  2012-06       Impact factor: 5.682

9.  Impartial comparative analysis of measurement of leukocyte telomere length/DNA content by Southern blots and qPCR.

Authors:  Abraham Aviv; Steven C Hunt; Jue Lin; Xiaojian Cao; Masayuki Kimura; Elizabeth Blackburn
Journal:  Nucleic Acids Res       Date:  2011-08-08       Impact factor: 16.971

10.  Reproducibility of telomere length assessment: an international collaborative study.

Authors:  Carmen M Martin-Ruiz; Duncan Baird; Laureline Roger; Petra Boukamp; Damir Krunic; Richard Cawthon; Martin M Dokter; Pim van der Harst; Sofie Bekaert; Tim de Meyer; Goran Roos; Ulrika Svenson; Veryan Codd; Nilesh J Samani; Liane McGlynn; Paul G Shiels; Karen A Pooley; Alison M Dunning; Rachel Cooper; Andrew Wong; Andrew Kingston; Thomas von Zglinicki
Journal:  Int J Epidemiol       Date:  2014-09-19       Impact factor: 7.196

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  8 in total

1.  A novel pooled-sample multiplex luminex assay for high-throughput measurement of relative telomere length.

Authors:  Farzana Jasmine; Justin Shinkle; Mekala Sabarinathan; Habibul Ahsan; Brandon L Pierce; Muhammad G Kibriya
Journal:  Am J Hum Biol       Date:  2018-03-12       Impact factor: 1.937

2.  Relative Telomere Length Change in Colorectal Carcinoma and Its Association with Tumor Characteristics, Gene Expression and Microsatellite Instability.

Authors:  Muhammad G Kibriya; Maruf Raza; Mohammed Kamal; Zahidul Haq; Rupash Paul; Andrew Mareczko; Brandon L Pierce; Habibul Ahsan; Farzana Jasmine
Journal:  Cancers (Basel)       Date:  2022-04-30       Impact factor: 6.575

3.  Enhancing GTEx by bridging the gaps between genotype, gene expression, and disease.

Authors: 
Journal:  Nat Genet       Date:  2017-10-11       Impact factor: 38.330

4.  The contribution of parent-to-offspring transmission of telomeres to the heritability of telomere length in humans.

Authors:  Dayana A Delgado; Chenan Zhang; Kevin Gleason; Kathryn Demanelis; Lin S Chen; Jianjun Gao; Shantanu Roy; Justin Shinkle; Mekala Sabarinathan; Maria Argos; Lin Tong; Alauddin Ahmed; Tariqul Islam; Muhammad Rakibuz-Zaman; Golam Sarwar; Hasan Shahriar; Mahfuzar Rahman; Muhammad Yunus; Jennifer A Doherty; Farzana Jasmine; Muhammad G Kibriya; Habibul Ahsan; Brandon L Pierce
Journal:  Hum Genet       Date:  2018-12-10       Impact factor: 5.881

5.  The association between telomere length and mortality in Bangladesh.

Authors:  Samantha G Dean; Chenan Zhang; Jianjun Gao; Shantanu Roy; Justin Shinkle; Mekala Sabarinathan; Maria Argos; Lin Tong; Alauddin Ahmed; Md Tariqul Islam; Tariqul Islam; Muhammad Rakibuz-Zaman; Golam Sarwar; Hasan Shahriar; Mahfuzar Rahman; Md Yunus; Joseph H Graziano; Lin S Chen; Farzana Jasmine; Muhammad G Kibriya; Habibul Ahsan; Brandon L Pierce
Journal:  Aging (Albany NY)       Date:  2017-06-15       Impact factor: 5.682

6.  Validation of quantitative polymerase chain reaction with Southern blot method for telomere length analysis.

Authors:  Mohamad Tarik; Lakshmy Ramakrishnan; Harshpal S Sachdev; Nikhil Tandon; Ambuj Roy; Santosh K Bhargava; Ravindra M Pandey
Journal:  Future Sci OA       Date:  2018-01-18

7.  Novel Luminex Assay for Telomere Repeat Mass Does Not Show Well Position Effects Like qPCR.

Authors:  Muhammad G Kibriya; Farzana Jasmine; Shantanu Roy; Habibul Ahsan; Brandon L Pierce
Journal:  PLoS One       Date:  2016-05-16       Impact factor: 3.240

8.  Genome-wide association study of telomere length among South Asians identifies a second RTEL1 association signal.

Authors:  Dayana A Delgado; Chenan Zhang; Lin S Chen; Jianjun Gao; Shantanu Roy; Justin Shinkle; Mekala Sabarinathan; Maria Argos; Lin Tong; Alauddin Ahmed; Tariqul Islam; Muhammad Rakibuz-Zaman; Golam Sarwar; Hasan Shahriar; Mahfuzar Rahman; Mohammad Yunus; Farzana Jasmine; Muhammad G Kibriya; Habibul Ahsan; Brandon L Pierce
Journal:  J Med Genet       Date:  2017-11-18       Impact factor: 5.941

  8 in total

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