Literature DB >> 27186024

Assessment of genetic diversity of Saltol QTL among the rice (Oryza sativa L.) genotypes.

Showkat Ahmad Ganie1, Mrinmoi Jyoti Borgohain1, Kashyap Kritika1, Akshay Talukdar2, Dipti Ranjan Pani3, Tapan Kumar Mondal1.   

Abstract

Eight Saltol quantitative trait locus (QTL) linked simple sequence repeat (SSR) markers of rice (Oryza sativa L.) were used to study the polymorphism of this QTL in 142 diverse rice genotypes that comprised salt tolerant as well as sensitive genotypes. The SSR profiles of the eight markers generated 99 alleles including 20rare alleles and 16 null alleles. RM8094 showed the highest number (13) of alleles followed by RM3412 (12), RM562 (11), RM493 (9) and RM1287 (8) while as, RM10764 and RM10745 showed the lowest number (6) of alleles. Based on the highest number of alleles and PIC value (0.991), we identified RM8094 as suitable marker for discerning salt tolerant genotypes from the sensitive ones. Based upon the haplotype analysis using FL478 as a reference (salt tolerant genotypes containing Saltol QTL), we short listed 68 rice genotypes that may have at least one allele of FL478 haplotype. Further study may confirm that some of these genotypes might have Saltol QTL and can be used as alternative donors in salt tolerant rice breeding programmes.

Entities:  

Keywords:  Genetic diversity; Microsatellites; Oryza sativa L.; Salinity stress; Saltol QTL

Year:  2016        PMID： 27186024      PMCID： PMC4840144          DOI： 10.1007/s12298-016-0342-6

Source DB:  PubMed          Journal:  Physiol Mol Biol Plants        ISSN： 0974-0430


  13 in total

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4.  Identification and characterization of salt responsive miRNA-SSR markers in rice (Oryza sativa).

Authors:  Tapan Kumar Mondal; Showkat Ahmad Ganie
Journal:  Gene       Date:  2013-12-04       Impact factor: 3.688

5.  Molecular evaluation of genetic diversity and association studies in rice (Oryza sativa L.).

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9.  Identification and analysis of novel salt responsive candidate gene based SSRs (cgSSRs) from rice (Oryza sativa L.).

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5.  Genome-wide analysis of DUF221 domain-containing gene family in Oryza species and identification of its salinity stress-responsive members in rice.

Authors:  Showkat Ahmad Ganie; Dipti Ranjan Pani; Tapan Kumar Mondal
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6.  First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza.

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7.  Genome-Wide Association Analysis for Salt-Induced Phenotypic and Physiologic Responses in Rice at Seedling and Reproductive Stages.

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9.  Discovery of microRNA-target modules of African rice (Oryza glaberrima) under salinity stress.

Authors:  Tapan Kumar Mondal; Alok Kumar Panda; Hukam C Rawal; Tilak Raj Sharma
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10.  Draft genome sequence of first monocot-halophytic species Oryza coarctata reveals stress-specific genes.

Authors:  Tapan Kumar Mondal; Hukam Chand Rawal; Soni Chowrasia; Deepti Varshney; Alok Kumar Panda; Abhishek Mazumdar; Harmeet Kaur; Kishor Gaikwad; Tilak Raj Sharma; Nagendra Kumar Singh
Journal:  Sci Rep       Date:  2018-09-12       Impact factor: 4.379
  10 in total

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