Literature DB >> 27185936

Cryo-EM reveals the steric zipper structure of a light chain-derived amyloid fibril.

Andreas Schmidt1, Karthikeyan Annamalai1, Matthias Schmidt1, Nikolaus Grigorieff2, Marcus Fändrich3.   

Abstract

Amyloid fibrils are proteinaceous aggregates associated with diseases in humans and animals. The fibrils are defined by intermolecular interactions between the fibril-forming polypeptide chains, but it has so far remained difficult to reveal the assembly of the peptide subunits in a full-scale fibril. Using electron cryomicroscopy (cryo-EM), we present a reconstruction of a fibril formed from the pathogenic core of an amyloidogenic immunoglobulin (Ig) light chain. The fibril density shows a lattice-like assembly of face-to-face packed peptide dimers that corresponds to the structure of steric zippers in peptide crystals. Interpretation of the density map with a molecular model enabled us to identify the intermolecular interactions between the peptides and rationalize the hierarchical structure of the fibril based on simple chemical principles.

Entities:  

Keywords:  Frealix; prion; protein aggregation; protein folding; systemic amyloidosis

Mesh:

Substances:

Year:  2016        PMID: 27185936      PMCID: PMC4896715          DOI: 10.1073/pnas.1522282113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  48 in total

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Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Strain-specific morphologies of yeast prion amyloid fibrils.

Authors:  Ruben Diaz-Avalos; Chih-Yen King; Joseph Wall; Martha Simon; Donald L D Caspar
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-08       Impact factor: 11.205

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Journal:  J Mol Biol       Date:  1997-10-31       Impact factor: 5.469

Review 4.  Magic angle spinning NMR of proteins: high-frequency dynamic nuclear polarization and (1)H detection.

Authors:  Yongchao Su; Loren Andreas; Robert G Griffin
Journal:  Annu Rev Biochem       Date:  2015-03-30       Impact factor: 23.643

5.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

6.  Solid-state NMR study of amyloid nanocrystals and fibrils formed by the peptide GNNQQNY from yeast prion protein Sup35p.

Authors:  Patrick C A van der Wel; Józef R Lewandowski; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2007-03-31       Impact factor: 15.419

7.  AGGRESCAN: a server for the prediction and evaluation of "hot spots" of aggregation in polypeptides.

Authors:  Oscar Conchillo-Solé; Natalia S de Groot; Francesc X Avilés; Josep Vendrell; Xavier Daura; Salvador Ventura
Journal:  BMC Bioinformatics       Date:  2007-02-27       Impact factor: 3.169

8.  Atomic-resolution three-dimensional structure of amyloid β fibrils bearing the Osaka mutation.

Authors:  Anne K Schütz; Toni Vagt; Matthias Huber; Oxana Y Ovchinnikova; Riccardo Cadalbert; Joseph Wall; Peter Güntert; Anja Böckmann; Rudi Glockshuber; Beat H Meier
Journal:  Angew Chem Int Ed Engl       Date:  2014-11-13       Impact factor: 15.336

9.  Globular tetramers of beta(2)-microglobulin assemble into elaborate amyloid fibrils.

Authors:  Helen E White; Julie L Hodgkinson; Thomas R Jahn; Sara Cohen-Krausz; Walraj S Gosal; Shirley Müller; Elena V Orlova; Sheena E Radford; Helen R Saibil
Journal:  J Mol Biol       Date:  2009-04-05       Impact factor: 5.469

10.  The structure of cross-β tapes and tubes formed by an octapeptide, αSβ1.

Authors:  Kyle L Morris; Shahin Zibaee; Lin Chen; Michel Goedert; Pawel Sikorski; Louise C Serpell
Journal:  Angew Chem Int Ed Engl       Date:  2013-01-10       Impact factor: 15.336

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  15 in total

Review 1.  Amyloid fibril polymorphism: a challenge for molecular imaging and therapy.

Authors:  M Fändrich; S Nyström; K P R Nilsson; A Böckmann; H LeVine; P Hammarström
Journal:  J Intern Med       Date:  2018-02-19       Impact factor: 8.989

Review 2.  Insights into the Molecular Mechanisms of Alzheimer's and Parkinson's Diseases with Molecular Simulations: Understanding the Roles of Artificial and Pathological Missense Mutations in Intrinsically Disordered Proteins Related to Pathology.

Authors:  Orkid Coskuner-Weber; Vladimir N Uversky
Journal:  Int J Mol Sci       Date:  2018-01-24       Impact factor: 5.923

3.  Nanomechanical properties of steric zipper globular structures.

Authors:  Neta Lester-Zer; Mnar Ghrayeb; Liraz Chai
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-21       Impact factor: 11.205

4.  A Conservative Point Mutation in a Dynamic Antigen-binding Loop of Human Immunoglobulin λ6 Light Chain Promotes Pathologic Amyloid Formation.

Authors:  Daniele Peterle; Elena S Klimtchuk; Thomas E Wales; Florian Georgescauld; Lawreen H Connors; John R Engen; Olga Gursky
Journal:  J Mol Biol       Date:  2021-10-19       Impact factor: 5.469

5.  Structure and energetic basis of overrepresented λ light chain in systemic light chain amyloidosis patients.

Authors:  Jun Zhao; Baohong Zhang; Jianwei Zhu; Ruth Nussinov; Buyong Ma
Journal:  Biochim Biophys Acta Mol Basis Dis       Date:  2017-12-12       Impact factor: 5.187

6.  Atomic-level evidence for packing and positional amyloid polymorphism by segment from TDP-43 RRM2.

Authors:  Elizabeth L Guenther; Peng Ge; Hamilton Trinh; Michael R Sawaya; Duilio Cascio; David R Boyer; Tamir Gonen; Z Hong Zhou; David S Eisenberg
Journal:  Nat Struct Mol Biol       Date:  2018-03-12       Impact factor: 15.369

7.  Protein Footprinting via Covalent Protein Painting Reveals Structural Changes of the Proteome in Alzheimer's Disease.

Authors:  Casimir Bamberger; Sandra Pankow; Salvador Martínez-Bartolomé; Michelle Ma; Jolene Diedrich; Robert A Rissman; John R Yates
Journal:  J Proteome Res       Date:  2021-04-19       Impact factor: 4.466

Review 8.  Current Understanding of the Structure, Stability and Dynamic Properties of Amyloid Fibrils.

Authors:  Eri Chatani; Keisuke Yuzu; Yumiko Ohhashi; Yuji Goto
Journal:  Int J Mol Sci       Date:  2021-04-21       Impact factor: 5.923

9.  MAK33 antibody light chain amyloid fibrils are similar to oligomeric precursors.

Authors:  Manuel Hora; Riddhiman Sarkar; Vanessa Morris; Kai Xue; Elke Prade; Emma Harding; Johannes Buchner; Bernd Reif
Journal:  PLoS One       Date:  2017-07-26       Impact factor: 3.240

10.  Physical basis of amyloid fibril polymorphism.

Authors:  William Close; Matthias Neumann; Andreas Schmidt; Manuel Hora; Karthikeyan Annamalai; Matthias Schmidt; Bernd Reif; Volker Schmidt; Nikolaus Grigorieff; Marcus Fändrich
Journal:  Nat Commun       Date:  2018-02-16       Impact factor: 14.919

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