Literature DB >> 27185643

Potential Pitfalls in Estimating Viral Load Heritability.

Gabriel E Leventhal1, Sebastian Bonhoeffer2.   

Abstract

In HIV patients, the set-point viral load (SPVL) is the most widely used predictor of disease severity. Yet SPVL varies over several orders of magnitude between patients. The heritability of SPVL quantifies how much of the variation in SPVL is due to transmissible viral genetics. There is currently no clear consensus on the value of SPVL heritability, as multiple studies have reported apparently discrepant estimates. Here we illustrate that the discrepancies in estimates are most likely due to differences in the estimation methods, rather than the study populations. Importantly, phylogenetic estimates run the risk of being strongly confounded by unrealistic model assumptions. Care must be taken when interpreting and comparing the different estimates to each other.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  HIV; heritability; phylogenetics; set-point viral load; virus evolution

Mesh:

Substances:

Year:  2016        PMID: 27185643     DOI: 10.1016/j.tim.2016.04.008

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  7 in total

1.  A transmission-virulence evolutionary trade-off explains attenuation of HIV-1 in Uganda.

Authors:  François Blanquart; Mary Kate Grabowski; Joshua Herbeck; Fred Nalugoda; David Serwadda; Michael A Eller; Merlin L Robb; Ronald Gray; Godfrey Kigozi; Oliver Laeyendecker; Katrina A Lythgoe; Gertrude Nakigozi; Thomas C Quinn; Steven J Reynolds; Maria J Wawer; Christophe Fraser
Journal:  Elife       Date:  2016-11-05       Impact factor: 8.140

2.  Parent-offspring regression to estimate the heritability of an HIV-1 trait in a realistic setup.

Authors:  Nadine Bachmann; Teja Turk; Claus Kadelka; Alex Marzel; Mohaned Shilaih; Jürg Böni; Vincent Aubert; Thomas Klimkait; Gabriel E Leventhal; Huldrych F Günthard; Roger Kouyos
Journal:  Retrovirology       Date:  2017-05-23       Impact factor: 4.602

3.  Estimating the Respective Contributions of Human and Viral Genetic Variation to HIV Control.

Authors:  István Bartha; Paul J McLaren; Chanson Brumme; Richard Harrigan; Amalio Telenti; Jacques Fellay
Journal:  PLoS Comput Biol       Date:  2017-02-09       Impact factor: 4.475

4.  Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe.

Authors:  François Blanquart; Chris Wymant; Marion Cornelissen; Astrid Gall; Margreet Bakker; Daniela Bezemer; Matthew Hall; Mariska Hillebregt; Swee Hoe Ong; Jan Albert; Norbert Bannert; Jacques Fellay; Katrien Fransen; Annabelle J Gourlay; M Kate Grabowski; Barbara Gunsenheimer-Bartmeyer; Huldrych F Günthard; Pia Kivelä; Roger Kouyos; Oliver Laeyendecker; Kirsi Liitsola; Laurence Meyer; Kholoud Porter; Matti Ristola; Ard van Sighem; Guido Vanham; Ben Berkhout; Paul Kellam; Peter Reiss; Christophe Fraser
Journal:  PLoS Biol       Date:  2017-06-12       Impact factor: 8.029

5.  A Practical Guide to Estimating the Heritability of Pathogen Traits.

Authors:  Venelin Mitov; Tanja Stadler
Journal:  Mol Biol Evol       Date:  2018-03-01       Impact factor: 16.240

6.  Heritability of the HIV-1 reservoir size and decay under long-term suppressive ART.

Authors:  Chenjie Wan; Nadine Bachmann; Venelin Mitov; François Blanquart; Susana Posada Céspedes; Teja Turk; Kathrin Neumann; Niko Beerenwinkel; Jasmina Bogojeska; Jacques Fellay; Volker Roth; Jürg Böni; Matthieu Perreau; Thomas Klimkait; Sabine Yerly; Manuel Battegay; Laura Walti; Alexandra Calmy; Pietro Vernazza; Enos Bernasconi; Matthias Cavassini; Karin J Metzner; Huldrych F Günthard; Roger D Kouyos
Journal:  Nat Commun       Date:  2020-11-02       Impact factor: 14.919

7.  Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T-Cell Decline, and Per-Parasite Pathogenicity.

Authors:  Frederic Bertels; Alex Marzel; Gabriel Leventhal; Venelin Mitov; Jacques Fellay; Huldrych F Günthard; Jürg Böni; Sabine Yerly; Thomas Klimkait; Vincent Aubert; Manuel Battegay; Andri Rauch; Matthias Cavassini; Alexandra Calmy; Enos Bernasconi; Patrick Schmid; Alexandra U Scherrer; Viktor Müller; Sebastian Bonhoeffer; Roger Kouyos; Roland R Regoes
Journal:  Mol Biol Evol       Date:  2018-01-01       Impact factor: 16.240

  7 in total

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