Literature DB >> 27183562

Genetic Time Travel.

Johannes Krause1, Svante Pääbo2.   

Abstract

At its core, genetics is a historical discipline. Mutations are passed on from generation to generation and accumulate as a result of chance as well as of selection within and between populations and species. However, until recently, geneticists were confined to the study of present-day genetic variation and could only indirectly make inferences about the historical processes that resulted in the variation in present-day gene pools. This "time trap" has now been overcome thanks to the ability to analyze DNA extracted from ancient remains, and this is about to revolutionize several aspects of genetics.
Copyright © 2016 by the Genetics Society of America.

Keywords:  ancient DNA; evolution

Mesh:

Year:  2016        PMID: 27183562      PMCID: PMC4858805          DOI: 10.1534/genetics.116.187856

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  40 in total

1.  Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.

Authors:  Ludovic Orlando; Aurélien Ginolhac; Guojie Zhang; Duane Froese; Anders Albrechtsen; Mathias Stiller; Mikkel Schubert; Enrico Cappellini; Bent Petersen; Ida Moltke; Philip L F Johnson; Matteo Fumagalli; Julia T Vilstrup; Maanasa Raghavan; Thorfinn Korneliussen; Anna-Sapfo Malaspinas; Josef Vogt; Damian Szklarczyk; Christian D Kelstrup; Jakob Vinther; Andrei Dolocan; Jesper Stenderup; Amhed M V Velazquez; James Cahill; Morten Rasmussen; Xiaoli Wang; Jiumeng Min; Grant D Zazula; Andaine Seguin-Orlando; Cecilie Mortensen; Kim Magnussen; John F Thompson; Jacobo Weinstock; Kristian Gregersen; Knut H Røed; Véra Eisenmann; Carl J Rubin; Donald C Miller; Douglas F Antczak; Mads F Bertelsen; Søren Brunak; Khaled A S Al-Rasheid; Oliver Ryder; Leif Andersson; John Mundy; Anders Krogh; M Thomas P Gilbert; Kurt Kjær; Thomas Sicheritz-Ponten; Lars Juhl Jensen; Jesper V Olsen; Michael Hofreiter; Rasmus Nielsen; Beth Shapiro; Jun Wang; Eske Willerslev
Journal:  Nature       Date:  2013-06-26       Impact factor: 49.962

2.  A high-coverage genome sequence from an archaic Denisovan individual.

Authors:  Matthias Meyer; Martin Kircher; Marie-Theres Gansauge; Heng Li; Fernando Racimo; Swapan Mallick; Joshua G Schraiber; Flora Jay; Kay Prüfer; Cesare de Filippo; Peter H Sudmant; Can Alkan; Qiaomei Fu; Ron Do; Nadin Rohland; Arti Tandon; Michael Siebauer; Richard E Green; Katarzyna Bryc; Adrian W Briggs; Udo Stenzel; Jesse Dabney; Jay Shendure; Jacob Kitzman; Michael F Hammer; Michael V Shunkov; Anatoli P Derevianko; Nick Patterson; Aida M Andrés; Evan E Eichler; Montgomery Slatkin; David Reich; Janet Kelso; Svante Pääbo
Journal:  Science       Date:  2012-08-30       Impact factor: 47.728

3.  A draft sequence of the Neandertal genome.

Authors:  Johannes Krause; Adrian W Briggs; Tomislav Maricic; Udo Stenzel; Martin Kircher; Nick Patterson; Richard E Green; Heng Li; Weiwei Zhai; Markus Hsi-Yang Fritz; Nancy F Hansen; Eric Y Durand; Anna-Sapfo Malaspinas; Jeffrey D Jensen; Tomas Marques-Bonet; Can Alkan; Kay Prüfer; Matthias Meyer; Hernán A Burbano; Jeffrey M Good; Rigo Schultz; Ayinuer Aximu-Petri; Anne Butthof; Barbara Höber; Barbara Höffner; Madlen Siegemund; Antje Weihmann; Chad Nusbaum; Eric S Lander; Carsten Russ; Nathaniel Novod; Jason Affourtit; Michael Egholm; Christine Verna; Pavao Rudan; Dejana Brajkovic; Željko Kucan; Ivan Gušic; Vladimir B Doronichev; Liubov V Golovanova; Carles Lalueza-Fox; Marco de la Rasilla; Javier Fortea; Antonio Rosas; Ralf W Schmitz; Philip L F Johnson; Evan E Eichler; Daniel Falush; Ewan Birney; James C Mullikin; Montgomery Slatkin; Rasmus Nielsen; Janet Kelso; Michael Lachmann; David Reich; Svante Pääbo
Journal:  Science       Date:  2010-05-07       Impact factor: 47.728

4.  Targeted investigation of the Neandertal genome by array-based sequence capture.

Authors:  Hernán A Burbano; Emily Hodges; Richard E Green; Adrian W Briggs; Johannes Krause; Matthias Meyer; Jeffrey M Good; Tomislav Maricic; Philip L F Johnson; Zhenyu Xuan; Michelle Rooks; Arindam Bhattacharjee; Leonardo Brizuela; Frank W Albert; Marco de la Rasilla; Javier Fortea; Antonio Rosas; Michael Lachmann; Gregory J Hannon; Svante Pääbo
Journal:  Science       Date:  2010-05-07       Impact factor: 47.728

5.  Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins.

Authors:  Matthias Meyer; Juan-Luis Arsuaga; Cesare de Filippo; Sarah Nagel; Ayinuer Aximu-Petri; Birgit Nickel; Ignacio Martínez; Ana Gracia; José María Bermúdez de Castro; Eudald Carbonell; Bence Viola; Janet Kelso; Kay Prüfer; Svante Pääbo
Journal:  Nature       Date:  2016-03-14       Impact factor: 49.962

6.  The shaping of modern human immune systems by multiregional admixture with archaic humans.

Authors:  Laurent Abi-Rached; Matthew J Jobin; Subhash Kulkarni; Alasdair McWhinnie; Klara Dalva; Loren Gragert; Farbod Babrzadeh; Baback Gharizadeh; Ma Luo; Francis A Plummer; Joshua Kimani; Mary Carrington; Derek Middleton; Raja Rajalingam; Meral Beksac; Steven G E Marsh; Martin Maiers; Lisbeth A Guethlein; Sofia Tavoularis; Ann-Margaret Little; Richard E Green; Paul J Norman; Peter Parham
Journal:  Science       Date:  2011-08-25       Impact factor: 47.728

7.  Pleistocene Mitochondrial Genomes Suggest a Single Major Dispersal of Non-Africans and a Late Glacial Population Turnover in Europe.

Authors:  Cosimo Posth; Gabriel Renaud; Alissa Mittnik; Dorothée G Drucker; Hélène Rougier; Christophe Cupillard; Frédérique Valentin; Corinne Thevenet; Anja Furtwängler; Christoph Wißing; Michael Francken; Maria Malina; Michael Bolus; Martina Lari; Elena Gigli; Giulia Capecchi; Isabelle Crevecoeur; Cédric Beauval; Damien Flas; Mietje Germonpré; Johannes van der Plicht; Richard Cottiaux; Bernard Gély; Annamaria Ronchitelli; Kurt Wehrberger; Dan Grigorescu; Jiří Svoboda; Patrick Semal; David Caramelli; Hervé Bocherens; Katerina Harvati; Nicholas J Conard; Wolfgang Haak; Adam Powell; Johannes Krause
Journal:  Curr Biol       Date:  2016-02-04       Impact factor: 10.834

8.  The complete mitochondrial DNA genome of an unknown hominin from southern Siberia.

Authors:  Johannes Krause; Qiaomei Fu; Jeffrey M Good; Bence Viola; Michael V Shunkov; Anatoli P Derevianko; Svante Pääbo
Journal:  Nature       Date:  2010-03-24       Impact factor: 49.962

9.  A draft genome of Yersinia pestis from victims of the Black Death.

Authors:  Kirsten I Bos; Verena J Schuenemann; G Brian Golding; Hernán A Burbano; Nicholas Waglechner; Brian K Coombes; Joseph B McPhee; Sharon N DeWitte; Matthias Meyer; Sarah Schmedes; James Wood; David J D Earn; D Ann Herring; Peter Bauer; Hendrik N Poinar; Johannes Krause
Journal:  Nature       Date:  2011-10-12       Impact factor: 49.962

10.  Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA.

Authors:  Susanna Sawyer; Johannes Krause; Katerina Guschanski; Vincent Savolainen; Svante Pääbo
Journal:  PLoS One       Date:  2012-03-30       Impact factor: 3.240

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  5 in total

1.  A manifesto for palaeodemography in the twenty-first century.

Authors:  Jennifer C French; Philip Riris; Javier Fernandéz-López de Pablo; Sergi Lozano; Fabio Silva
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-11-30       Impact factor: 6.237

2.  Inferring Past Environments from Ancient Epigenomes.

Authors:  David Gokhman; Anat Malul; Liran Carmel
Journal:  Mol Biol Evol       Date:  2017-10-01       Impact factor: 16.240

3.  Reconciling material cultures in archaeology with genetic data: The nomenclature of clusters emerging from archaeogenomic analysis.

Authors:  Stefanie Eisenmann; Eszter Bánffy; Peter van Dommelen; Kerstin P Hofmann; Joseph Maran; Iosif Lazaridis; Alissa Mittnik; Michael McCormick; Johannes Krause; David Reich; Philipp W Stockhammer
Journal:  Sci Rep       Date:  2018-08-29       Impact factor: 4.379

4.  Molecular comparison of Neanderthal and Modern Human adenylosuccinate lyase.

Authors:  Bart Van Laer; Ulrike Kapp; Montserrat Soler-Lopez; Kaja Moczulska; Svante Pääbo; Gordon Leonard; Christoph Mueller-Dieckmann
Journal:  Sci Rep       Date:  2018-12-20       Impact factor: 4.379

5.  Human mobility at Tell Atchana (Alalakh), Hatay, Turkey during the 2nd millennium BC: Integration of isotopic and genomic evidence.

Authors:  Tara Ingman; Stefanie Eisenmann; Eirini Skourtanioti; Murat Akar; Jana Ilgner; Guido Alberto Gnecchi Ruscone; Petrus le Roux; Rula Shafiq; Gunnar U Neumann; Marcel Keller; Cäcilia Freund; Sara Marzo; Mary Lucas; Johannes Krause; Patrick Roberts; K Aslıhan Yener; Philipp W Stockhammer
Journal:  PLoS One       Date:  2021-06-30       Impact factor: 3.240

  5 in total

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