Literature DB >> 27176304

Extensions to a manifold learning framework for time-series analysis on dynamic manifolds in bioelectric signals.

Burak Erem1, Ramon Martinez Orellana2, Damon E Hyde1, Jurriaan M Peters1, Frank H Duffy1, Petr Stovicek3, Simon K Warfield1, Rob S MacLeod4, Gilead Tadmor2, Dana H Brooks2.   

Abstract

This paper addresses the challenge of extracting meaningful information from measured bioelectric signals generated by complex, large scale physiological systems such as the brain or the heart. We focus on a combination of the well-known Laplacian eigenmaps machine learning approach with dynamical systems ideas to analyze emergent dynamic behaviors. The method reconstructs the abstract dynamical system phase-space geometry of the embedded measurements and tracks changes in physiological conditions or activities through changes in that geometry. It is geared to extract information from the joint behavior of time traces obtained from large sensor arrays, such as those used in multiple-electrode ECG and EEG, and explore the geometrical structure of the low dimensional embedding of moving time windows of those joint snapshots. Our main contribution is a method for mapping vectors from the phase space to the data domain. We present cases to evaluate the methods, including a synthetic example using the chaotic Lorenz system, several sets of cardiac measurements from both canine and human hearts, and measurements from a human brain.

Entities:  

Mesh:

Year:  2016        PMID: 27176304      PMCID: PMC4866516          DOI: 10.1103/PhysRevE.93.042218

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  26 in total

1.  A global geometric framework for nonlinear dimensionality reduction.

Authors:  J B Tenenbaum; V de Silva; J C Langford
Journal:  Science       Date:  2000-12-22       Impact factor: 47.728

2.  A neural mass model for MEG/EEG: coupling and neuronal dynamics.

Authors:  Olivier David; Karl J Friston
Journal:  Neuroimage       Date:  2003-11       Impact factor: 6.556

3.  Nonlinear Laplacian spectral analysis for time series with intermittency and low-frequency variability.

Authors:  Dimitrios Giannakis; Andrew J Majda
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-17       Impact factor: 11.205

4.  Multiscale multifractality analysis of a 12-lead electrocardiogram.

Authors:  Jun Wang; Xinbao Ning; Qianli Ma; Chunhua Bian; Yinlin Xu; Ying Chen
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-06-30

5.  Inferring phase equations from multivariate time series.

Authors:  Isao T Tokuda; Swati Jain; István Z Kiss; John L Hudson
Journal:  Phys Rev Lett       Date:  2007-08-08       Impact factor: 9.161

6.  Chronotaxic systems: a new class of self-sustained nonautonomous oscillators.

Authors:  Yevhen F Suprunenko; Philip T Clemson; Aneta Stefanovska
Journal:  Phys Rev Lett       Date:  2013-07-08       Impact factor: 9.161

Review 7.  Whole-heart modeling: applications to cardiac electrophysiology and electromechanics.

Authors:  Natalia A Trayanova
Journal:  Circ Res       Date:  2011-01-07       Impact factor: 17.367

8.  Derivation and analysis of an ordinary differential equation mean-field model for studying clinically recorded epilepsy dynamics.

Authors:  Frank Marten; Serafim Rodrigues; Piotr Suffczynski; Mark P Richardson; John R Terry
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-02-11

9.  COMBINED DELAY AND GRAPH EMBEDDING OF EPILEPTIC DISCHARGES IN EEG REVEALS COMPLEX AND RECURRENT NONLINEAR DYNAMICS.

Authors:  B Erem; D E Hyde; J M Peters; F H Duffy; D H Brooks; S K Warfield
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2015-04

10.  Brain functional networks in syndromic and non-syndromic autism: a graph theoretical study of EEG connectivity.

Authors:  Jurriaan M Peters; Maxime Taquet; Clemente Vega; Shafali S Jeste; Iván Sánchez Fernández; Jacqueline Tan; Charles A Nelson; Mustafa Sahin; Simon K Warfield
Journal:  BMC Med       Date:  2013-02-27       Impact factor: 8.775

View more
  7 in total

1.  Novel Biomarker for Evaluating Ischemic Stress Using an Electrogram Derived Phase Space.

Authors:  Wilson W Good; Burak Erem; Jaume Coll-Font; Dana H Brooks; Rob S MacLeod
Journal:  Comput Cardiol (2010)       Date:  2017-03-02

2.  Dynamic Electrical Source Imaging (DESI) of Seizures and Interictal Epileptic Discharges Without Ensemble Averaging.

Authors:  Burak Erem; Damon E Hyde; Jurriaan M Peters; Frank H Duffy; Simon K Warfield
Journal:  IEEE Trans Med Imaging       Date:  2016-07-27       Impact factor: 10.048

3.  Temporal Performance of Laplacian Eigenmaps and 3D Conduction Velocity in Detecting Ischemic Stress.

Authors:  Wilson W Good; Burak Erem; Brian Zenger; Jaume Coll-Font; Dana H Brooks; Rob S MacLeod
Journal:  J Electrocardiol       Date:  2018-08-13       Impact factor: 1.438

4.  Characterizing the transient electrocardiographic signature of ischemic stress using Laplacian Eigenmaps for dimensionality reduction.

Authors:  W W Good; B Erem; B Zenger; J Coll-Font; J A Bergquist; D H Brooks; R S MacLeod
Journal:  Comput Biol Med       Date:  2020-10-28       Impact factor: 4.589

5.  Detecting Ischemic Stress to the Myocardium Using Laplacian Eigenmaps and Changes to Conduction Velocity.

Authors:  Wilson W Good; Burak Erem; Jaume Coll-Font; Dana H Brooks; Rob S MacLeod
Journal:  Comput Cardiol (2010)       Date:  2018-04-05

6.  New approach for visualization of relationships between RR and JT intervals.

Authors:  Pranas Ziaukas; Abdullah Alabdulgader; Alfonsas Vainoras; Zenonas Navickas; Minvydas Ragulskis
Journal:  PLoS One       Date:  2017-04-05       Impact factor: 3.240

7.  Visualization of Complex Processes in Cardiovascular System during Electrical Auricular Vagus Nerve Stimulation.

Authors:  Vaiva Šiaučiūnaitė; Minvydas Ragulskis; Alfonsas Vainoras; Babak Dabiri; Eugenijus Kaniusas
Journal:  Diagnostics (Basel)       Date:  2021-11-25
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.