Literature DB >> 27174403

Toward Systems Understanding of Leaf Senescence: An Integrated Multi-Omics Perspective on Leaf Senescence Research.

Jeongsik Kim1, Hye Ryun Woo2, Hong Gil Nam3.   

Abstract

Leaf senescence is a complex but tightly regulated developmental process involving a coordinated sequence of multiple molecular events, which ultimately leads to death of the leaf. Efforts to understand the mechanistic principles underlying leaf senescence have been largely made by transcriptomic, proteomic, and metabolomic studies over the past decade. This review focuses on recent milestones in leaf senescence research obtained using multi-omics technologies, as well as future endeavors toward systems understanding of leaf senescence processes. In particular, we discuss recent advances in understanding molecular events during leaf senescence through genome-wide transcriptome analyses in Arabidopsis. We also describe comparative transcriptome analyses used to unveil the commonality and diversity of regulatory mechanisms governing leaf senescence in the plant kingdom. Finally, we provide current illustrations of epigenomic, proteomic, and metabolomic landscapes of leaf senescence. We envisage that integration of multi-omics leaf senescence data will enable us to address unresolved questions regarding leaf senescence, including determining the molecular principles that coordinate concurrent and ordered changes in biological events during leaf senescence.
Copyright © 2016 The Author. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  epigenomics; leaf senescence; metabolomics; multi-omics; proteomics; transcriptomics

Mesh:

Year:  2016        PMID: 27174403     DOI: 10.1016/j.molp.2016.04.017

Source DB:  PubMed          Journal:  Mol Plant        ISSN: 1674-2052            Impact factor:   13.164


  61 in total

1.  Diversity of metabolite accumulation patterns in inner and outer seed coats of pomegranate: exploring their relationship with genetic mechanisms of seed coat development.

Authors:  Gaihua Qin; Chunyan Liu; Jiyu Li; Yongjie Qi; Zhenghui Gao; Xiaoling Zhang; Xingkai Yi; Haifa Pan; Ray Ming; Yiliu Xu
Journal:  Hortic Res       Date:  2020-01-07       Impact factor: 6.793

2.  ASCORBATE PEROXIDASE6 delays the onset of age-dependent leaf senescence.

Authors:  Changming Chen; Yael Galon; Maryam Rahmati Ishka; Shimrit Malihi; Vladislava Shimanovsky; Shir Twito; Abhishek Rath; Olena K Vatamaniuk; Gad Miller
Journal:  Plant Physiol       Date:  2021-03-15       Impact factor: 8.340

3.  The Arabidopsis Mitochondrial Protease FtSH4 Is Involved in Leaf Senescence via Regulation of WRKY-Dependent Salicylic Acid Accumulation and Signaling.

Authors:  Shengchun Zhang; Cui Li; Rui Wang; Yaxue Chen; Si Shu; Ruihua Huang; Daowei Zhang; Jian Li; Shi Xiao; Nan Yao; Chengwei Yang
Journal:  Plant Physiol       Date:  2017-03-01       Impact factor: 8.340

Review 4.  Sugar metabolism as input signals and fuel for leaf senescence.

Authors:  Jeongsik Kim
Journal:  Genes Genomics       Date:  2019-03-16       Impact factor: 1.839

5.  A Subsidiary Cell-Localized Glucose Transporter Promotes Stomatal Conductance and Photosynthesis.

Authors:  Hai Wang; Shijuan Yan; Hongjia Xin; Wenjie Huang; Hao Zhang; Shouzhen Teng; Ya-Chi Yu; Alisdair R Fernie; Xiaoduo Lu; Pengcheng Li; Shengyan Li; Chunyi Zhang; Yong-Ling Ruan; Li-Qing Chen; Zhihong Lang
Journal:  Plant Cell       Date:  2019-04-17       Impact factor: 11.277

6.  Formyl tetrahydrofolate deformylase affects hydrogen peroxide accumulation and leaf senescence by regulating the folate status and redox homeostasis in rice.

Authors:  Erhui Xiong; Guojun Dong; Fei Chen; Chen Zhang; Shan Li; Yanli Zhang; Jahidul Islam Shohag; Xiaoe Yang; Yihua Zhou; Qian Qian; Limin Wu; Yanchun Yu
Journal:  Sci China Life Sci       Date:  2020-09-14       Impact factor: 6.038

7.  Multi-omics approach reveals the contribution of KLU to leaf longevity and drought tolerance.

Authors:  Liang Jiang; Takuya Yoshida; Sofia Stiegert; Yue Jing; Saleh Alseekh; Michael Lenhard; Francisco Pérez-Alfocea; Alisdair R Fernie
Journal:  Plant Physiol       Date:  2021-03-15       Impact factor: 8.340

8.  Plant Proteomics and Systems Biology.

Authors:  Flavia Vischi Winck; André Luis Wendt Dos Santos; Maria Juliana Calderan-Rodrigues
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

Review 9.  Plant proteases during developmental programmed cell death.

Authors:  Rafael Andrade Buono; Roman Hudecek; Moritz K Nowack
Journal:  J Exp Bot       Date:  2019-04-12       Impact factor: 6.992

10.  Label-Free Proteomic Analysis of Smoke-Drying and Shade-Drying Processes of Postharvest Rhubarb: A Comparative Study.

Authors:  Wei Liang; Yuan Chen; Xia Li; Fengxia Guo; Jiachen Sun; Xuemin Zhang; Bo Xu; Wenyuan Gao
Journal:  Front Plant Sci       Date:  2021-05-26       Impact factor: 5.753

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