| Literature DB >> 27174326 |
Ting-Ting Li1, Hong Qiao1, Hui-Xin Tong1, Tian-Wei Zhuang1, Tong-Tong Wang1.
Abstract
BACKGROUND: A study has identified several novel susceptibility variants of the mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) gene for type 2 diabetes mellitus (T2DM) within the German population. Among the variants, five single nucleotide polymorphisms (SNPs) of MAP4K4 (rs1003376, rs11674694, rs2236935, rs2236936, and rs6543087) showed significant association with T2DM or diabetes-related quantitative traits. We aimed to evaluate whether common SNPs in the MAP4K4 gene were associated with T2DM in the Chinese population.Entities:
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Year: 2016 PMID: 27174326 PMCID: PMC4878163 DOI: 10.4103/0366-6999.181969
Source DB: PubMed Journal: Chin Med J (Engl) ISSN: 0366-6999 Impact factor: 2.628
Baseline characteristics of individuals in the cases and controls
| Characteristics | Type 2 diabetes ( | Controls ( | Statistical values | |
|---|---|---|---|---|
| Gender (male:female) | 612:383 | 568:399 | 1.62* | 0.220 |
| Age (years) | 46.1 ± 12.6 | 42.9 ± 11.7 | 5.78† | <0.001 |
| Height (m) | 1.68 ± 0.08 | 1.69 ± 0.08 | −1.86† | 0.063 |
| Weight (kg) | 73.13 ± 13.45 | 66.63 ± 12.39 | 11.13† | <0.001 |
| BMI (kg/m2) | 25.78 ± 3.58 | 23.33 ± 3.35 | 15.70† | <0.001 |
| Waist circumferences (cm) | 93.49 ± 10.45 | 81.27 ± 10.88 | 25.40† | <0.001 |
| Hip circumferences (cm) | 99.48 ± 7.44 | 95.77 ± 7.21 | 11.13† | <0.001 |
| WHR | 0.94 ± 0.06 | 0.85 ± 0.07 | 30.89† | <0.001 |
| Systolic pressure (mmHg) | 130.16 ± 17.51 | 121.30 ± 15.09 | 12.03† | <0.001 |
| Diastolic pressure (mmHg) | 84.64 ± 11.17 | 79.24 ± 9.64 | 11.42† | <0.001 |
| Fasting plasma glucose (mmol/L) | 10.04 ± 3.40 | 4.82 ± 0.29 | 47.40† | <0.001 |
| Total cholesterol (mmol/L) | 5.00 ± 1.29 | 4.88 ± 1.01 | 2.30† | 0.022 |
| Triglyceride (mmol/L) | 2.38 ± 2.25 | 1.42 ± 0.95 | 12.30† | <0.001 |
| HDL-C (mmol/L) | 1.21 ± 0.32 | 1.47 ± 0.35 | −17.14† | <0.001 |
| LDL-C (mmol/L) | 2.91 ± 0.96 | 2.92 ± 0.86 | −0.23† | 0.815 |
| Fasting insulin (mU/L) | 12.90 ± 7.59 | 7.87 ± 4.43 | 17.90† | <0.001 |
| HbA1c (%) | 9.30 ± 2.36 | 5.12 ± 0.47 | 53.90† | <0.001 |
| HOMA-β | 38.86 (22.09, 69.85) | 103.31 (69.92, 149.01) | −25.87‡ | <0.001 |
| HOMA-IR | 4.81 (2.77, 7.48) | 1.51 (1.01, 2.16) | −29.97‡ | <0.001 |
Data are presented as n, mean ± SD or median (P25, P75). *χ2; † t; ‡Z. BMI: Body mass index; WHR: Waist-hip ratio; HDL-C: High-density lipoprotein cholesterol; LDL-C: Low-density lipoprotein cholesterol; HOMA-β: Homeostasis model assessment of beta-cell function; HOMA-IR: Homeostasis model assessment of insulin resistance; SD: Standard deviation; BMI: Body mass index; HbA1c: Glycated hemoglobin.
Association analysis of MAP4K4 candidate SNPs for type 2 diabetes
| dbSNP | Cases ( | Controls ( | Crude | Adjust* | ||
|---|---|---|---|---|---|---|
| rs1003376 | ||||||
| C/C | 642 (64.5) | 610 (63.1) | 1 | 1 | ||
| G/C | 309 (31.1) | 298 (30.8) | 0.880 | 0.985 (0.812–1.196) | 0.510 | 0.933 (0.758–1.148) |
| G/G | 44 (4.4) | 59 (6.1) | 0.096 | 1.411 (0.940–2.118) | 0.189 | 0.746 (0.482–1.155) |
| rs11674694 | ||||||
| C/C | 264 (26.5) | 268 (27.7) | 1 | 1 | ||
| C/T | 517 (52.0) | 468 (48.4) | 0.287 | 1.121 (0.908–1.385) | 0.418 | 1.098 (0.876–1.377) |
| T/T | 214 (21.5) | 231 (23.9) | 0.633 | 0.940 (0.731–1.210) | 0.935 | 0.989 (0.755–1.295) |
| rs2236935 | ||||||
| T/T | 725 (72.9) | 747 (77.2) | 1 | 1 | ||
| C/T | 261 (26.2) | 204 (21.1) | 0.010 | 1.318 (1.069–1.626) | 0.025 | 1.293 (1.034–1.619) |
| C/C | 9 (0.9) | 16 (1.7) | 0.194 | 0.580 (0.254–1.320) | 0.284 | 0.622 (0.260–1.484) |
| rs2236936 | ||||||
| G/G | 543 (54.6) | 564 (58.3) | 1 | 1 | ||
| G/C | 394 (39.6) | 339 (35.1) | 0.048 | 1.207 (1.001–1.455) | 0.230 | 1.130 (0.925–1.381) |
| C/C | 57 (5.7) | 64 (6.6) | 0.685 | 0.925 (0.635–1.347) | 0.817 | 0.953 (0.635–1.431) |
| rs6543087 | ||||||
| T/T | 247 (24.8) | 273 (28.3) | 1 | 1 | ||
| A/T | 530 (53.3) | 459 (47.5) | 0.025 | 1.276 (1.032–1.579) | 0.108 | 1.205 (0.960–1.512) |
| A/A | 218 (21.9) | 234 (24.2) | 0.820 | 1.030 (0.800–1.325) | 0.938 | 0.989 (0.755–1.297) |
*Adjusted for age, gender, and BMI. CI: Confidence interval; OR: Odds ratio; SNPs: Single nucleotide polymorphisms; MAP4K4: Mitogen-activated protein kinase kinase kinase kinase 4.
Figure 1Linkage disequilibrium patterns of five typed single nucleotide polymorphisms in the Chinese population. This plot was generated using the Haploview program with the confidence intervals setting. One block was determined. The rs number (top: from left to right) corresponds to the single nucleotide polymorphism name and the number in each square is D' values or r2 values of single nucleotide polymorphisms. The measure of linkage disequilibrium (D' or r2) among all possible pairs of single nucleotide polymorphisms is shown graphically according to the shade of color, whereas white represents very low linkage disequilibrium values and dark represents very high linkage disequilibrium values.
Haplotype frequencies of MAP4K4 gene variants in control and patients with type 2 diabetes
| Haplotype block (>1% frequency) | Haplotype frequency | ||
|---|---|---|---|
| TTGT | 0.478 | 0.124 | 0.683 |
| ACGT | 0.234 | 0.141 | 0.576 |
| ACCC | 0.131 | 1.038 | 0.098 |
| ACCT | 0.117 | 2.841 | 0.691 |
| TCGT | 0.040 | 1.453 | 0.953 |
MAP4K4: Mitogen-activated protein kinase kinase kinase kinase 4.
Associations of the genetic variants with prediabetes-related clinical trials among control subjects
| SNP | BMI (kg/m2) | FPG (mmol/L) | HDL (mmo/L) | HbA1c (%) | HOMA-β | HOMA-IR | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs1003376 | ||||||||||||||||||
| CC | 23.5 ± 3.3 | 0.045 | −0.356 | 4.83 ± 0.29 | 0.745 | 0.011 | 1.46 ± 0.35 | 0.519 | 0.009 | 5.12 ± 0.48 | 0.728 | 0.009 | 107.59 (70.97, 154.62) | 0.924 | −0.761 | 1.55 (1.01, 2.26) | 0.037 | −0.112 |
| GC | 23.1 ± 3.4 | 4.84 ± 0.28 | 1.49 ± 0.37 | 5.11 ± 20.50 | 99.01 (67.92, 144.00) | 1.44 (1.01, 1.98) | ||||||||||||
| GG | 22.9 ± 3.1 | 4.84 ± 0.29 | 1.46 ± 0.31 | 5.16 ± 0.45 | 100.63 (57.51, 147.46) | 1.39 (0.92, 1.91) | ||||||||||||
| rs11674694 | ||||||||||||||||||
| CC | 23.1 ± 3.3 | 0.333 | 0.146 | 4.84 ± 0.28 | 0.855 | −0.001 | 1.50 ± 0.35 | 0.253 | −0.021 | 5.13 ± 0.48 | 0.924 | 0.001 | 105.43 (72.26, 150.13) | 0.629 | −3.260 | 1.50 (1.02, 2.02) | 0.984 | 0.009 |
| CT | 23.4 ± 3.4 | 4.84 ± 0.29 | 1.47 ± 0.36 | 5.11 ± 0.47 | 101.33 (68.44, 148.28) | 1.51 (1.00, 2.13) | ||||||||||||
| TT | 23.4 ± 3.3 | 4.83 ± 0.29 | 1.46 ± 0.36 | 5.13 ± 0.46 | 106.54 (70.41, 152.62) | 1.51 (0.95, 2.24) | ||||||||||||
| rs2236935 | ||||||||||||||||||
| TT | 23.3 ± 3.4 | 0.313 | 0.233 | 4.84 ± 0.27 | 0.738 | 0.007 | 1.48 ± 0.36 | 0.146 | −0.043 | 5.11 ± 0.48 | 0.587 | 0.023 | 104.69 (68.94, 148.37) | 0.383 | −9.033 | 1.51 (1.01, 2.12) | 0.985 | −0.009 |
| CT | 23.4 ± 3.4 | 4.83 ± 0.30 | 1.44 ± 0.34 | 5.13 ± 0.46 | 102.38 (70.32, 157.22) | 1.49 (0.98, 2.25) | ||||||||||||
| CC | 24.4 ± 3.0 | 4.93 ± 0.17 | 1.45 ± 0.25 | 5.14 ± 0.40 | 103.71 (84.75, 126.08) | 1.69 (1.27, 2.14) | ||||||||||||
| rs2236936 | ||||||||||||||||||
| GG | 23.2 ± 3.3 | 0.306 | 0.178 | 4.83 ± 0.29 | 0.474 | 0.011 | 1.47 ± 0.36 | 0.784 | 0.012 | 5.11 ± 0.48 | 0.557 | 0.011 | 103.13 (68.96, 148.85) | 0.378 | −6.901 | 1.50 (0.97, 2.11) | 0.684 | 0.017 |
| GC | 23.5 ± 3.4 | 4.84 ± 0.29 | 1.47 ± 0.34 | 5.12 ± 0.47 | 103.17 (69.21, 150.93) | 1.49 (1.02, 2.17) | ||||||||||||
| CC | 23.5 ± 3.6 | 4.86 ± 0.27 | 1.50 ± 0.34 | 5.15 ± 0.41 | 107.13 (81.00, 139.67) | 1.68 (1.03, 2.37) | ||||||||||||
| rs6543087 | ||||||||||||||||||
| TT | 23.4 ± 3.3 | 0.277 | −0.162 | 4.82 ± 0.31 | 0.410 | 0.011 | 1.45 ± 0.36 | 0.187 | 0.021 | 5.13 ± 0.47 | 0.897 | −0.003 | 111.11 (71.60, 168.00) | 0.975 | −0.208 | 1.55 (0.99, 2.3) | 0.380 | −0.038 |
| AT | 23.4 ± 3.4 | 4.85 ± 0.28 | 1.47 ± 0.34 | 5.11 ± 0.47 | 99.36 (66.67, 143.57) | 1.46 (0.99, 2.06) | ||||||||||||
| AA | 23.1 ± 3.3 | 4.84 ± 0.29 | 1.49 ± 0.36 | 5.13 ± 0.48 | 106.64 (72.49, 150.97) | 1.50 (1.04, 2.12) |
The results of linear regression analysis after adjusting for age, gender, and BMI were shown. Data are presented as mean ± SD or median (P25, P75). SNPs: Single-nucleotide polymorphisms; BMI: Body mass index; FPG: Fasting plasma glucose; HDL-C: High-density lipoprotein cholesterol; HbA1c: Glycated hemoglobin; HOMA-β: Homeostasis model assessment of beta-cell function; HOMA-IR: Homeostasis model assessment of insulin resistance; SD: Standard deviation; BMI: Body mass index.