Literature DB >> 27168649

Molecular and Morphological Characterization of Xiphinema chambersi Population from Live Oak in Jekyll Island, Georgia, with Comments on Morphometric Variations.

Zafar A Handoo1, Lynn K Carta1, Andrea M Skantar1, Sergei A Subbotin2, Stephen W Fraedrich3.   

Abstract

A population of Xiphinema chambersi from the root zone around live oak (Quercus virginiana Mill.) trees on Jekyll Island, GA, is described using both morphological and molecular tools and compared with descriptions of type specimens. Initially, because of a few morphological differences, this nematode was thought to represent an undescribed species. However, on further examination, the morphometrics of the nematodes from live oak tend to agree with most of the morphometrics in the original description and redescription of X. chambersi except for few minor differences in V% relative to body length, slightly shorter stylet length, different c value, and the number of caudal pores. We consider these differences to be part of the normal variation within this species and accordingly image this new population of X. chambersi and redescribe the species. The new population is characterized by having females with a body length of 2.1 to 2.5 mm; lip region slightly rounded and set off from head; total stylet length 170 to 193 µm; vulva at 20.4% to 21.8% of body length; a monodelphic, posterior reproductive system; elongate, conoid tail with a blunt terminus and four pairs of caudal pores, of which two pairs are subdorsal and two subventral. Sequence data from the D2-D3 region of the 28S rRNA molecule subjected to GenBank sequence comparison using BLAST showed that the sequence had 96% and 99% similarity with X. chambersi from Alabama and Florida, respectively. Phylogenetic relationships of X. chambersi with other xiphinematids based on analysis of this DNA fragment are presented. This finding represents a new location of X. chambersi in Georgia on live oak for this species.

Entities:  

Keywords:  28S rRNA; Xiphinema chambersi; live oak; morphology; morphometrics; phylogeny; redescription; taxonomy; tree

Year:  2016        PMID: 27168649      PMCID: PMC4859614          DOI: 10.21307/jofnem-2017-005

Source DB:  PubMed          Journal:  J Nematol        ISSN: 0022-300X            Impact factor:   1.402


  5 in total

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Authors:  J P Huelsenbeck; F Ronquist
Journal:  Bioinformatics       Date:  2001-08       Impact factor: 6.937

2.  Phylogenetic Relationships and Genetic Variation in Longidorus and Xiphinema Species (Nematoda: Longidoridae) Using ITS1 Sequences of Nuclear Ribosomal DNA.

Authors:  Weimin Ye; Allen L Szalanski; R T Robbins
Journal:  J Nematol       Date:  2004-03       Impact factor: 1.402

3.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

4.  A contribution to the taxonomy of the genus xiphinema cobb, 1913.

Authors:  E Cohn; S A Sher
Journal:  J Nematol       Date:  1972-01       Impact factor: 1.402

5.  Ribosomal and Mitochondrial DNA Analyses of Xiphinema americanum-Group Populations.

Authors:  Stela S Lazarova; Gaynor Malloch; Claudio M G Oliveira; Judith Hübschen; Roy Neilson
Journal:  J Nematol       Date:  2006-12       Impact factor: 1.402

  5 in total
  3 in total

1.  Description of Xiphinema parachambersi sp. n. (Nematoda: Longidoridae) from Imported Ornamental Plants in Japan with a Key to Xiphinema Species in Group 1.

Authors:  Munawar Maria; Weimin Ye; Qing Yu; Jianfeng Gu
Journal:  J Nematol       Date:  2018       Impact factor: 1.402

2.  Molecular and Morphological Characterization of The Root -lesion Nematode, Pratylenchus Neglectus, on Corn from Henan Province of China.

Authors:  Y H Xia; Y K Liu; P H Hao; H X Yuan; K Wang; H L Li; Y Li
Journal:  Helminthologia       Date:  2021-12-25       Impact factor: 1.184

3.  Morpho-Molecular and Ultrastructural Characterization of Discocriconemella Parasinensis n. Sp. from Zhejiang Province, China.

Authors:  Junxia Li; Maria Munawar; Pablo Castillo; Jingwu Zheng
Journal:  J Nematol       Date:  2022-05-18       Impact factor: 1.481

  3 in total

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