Literature DB >> 27167723

Fine-Tuning Next-Generation Genome Editing Tools.

Chidananda Nagamangala Kanchiswamy1, Massimo Maffei2, Mickael Malnoy3, Riccardo Velasco3, Jin-Soo Kim4.   

Abstract

The availability of genome sequences of numerous organisms and the revolution brought about by genome editing tools (e.g., ZFNs, TALENs, and CRISPR/Cas9 or RGENs) has provided a breakthrough in introducing targeted genetic changes both to explore emergent phenotypes and to introduce new functionalities. However, the wider application of these tools in biology, agriculture, medicine, and biotechnology is limited by off-target mutation effects. In this review, we compare available methods for detecting, measuring, and analyzing off-target mutations. Furthermore, we particularly focus on CRISPR/Cas9 regarding various methods, tweaks, and software tools available to nullify off-target effects.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Keywords:  CRISPR/Cas9; TALENs; ZFNs; genome editing; off-target; on-target; target specificity

Mesh:

Year:  2016        PMID: 27167723     DOI: 10.1016/j.tibtech.2016.03.007

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  15 in total

Review 1.  Dissecting Tissue-Specific Super-Enhancers by Integrating Genome-Wide Analyses and CRISPR/Cas9 Genome Editing.

Authors:  Kyung Hyun Yoo; Lothar Hennighausen; Ha Youn Shin
Journal:  J Mammary Gland Biol Neoplasia       Date:  2018-10-06       Impact factor: 2.673

2.  A proposal for validation of antibodies.

Authors:  Mathias Uhlen; Anita Bandrowski; Steven Carr; Aled Edwards; Jan Ellenberg; Emma Lundberg; David L Rimm; Henry Rodriguez; Tara Hiltke; Michael Snyder; Tadashi Yamamoto
Journal:  Nat Methods       Date:  2016-09-05       Impact factor: 28.547

3.  Genome Editing for Rare Diseases.

Authors:  Arun Pradhan; Tanya V Kalin; Vladimir V Kalinichenko
Journal:  Curr Stem Cell Rep       Date:  2020-07-07

Review 4.  Recent Developments in Systems Biology and Metabolic Engineering of Plant-Microbe Interactions.

Authors:  Vishal Kumar; Mehak Baweja; Puneet K Singh; Pratyoosh Shukla
Journal:  Front Plant Sci       Date:  2016-09-26       Impact factor: 5.753

5.  DNA-Free Genetically Edited Grapevine and Apple Protoplast Using CRISPR/Cas9 Ribonucleoproteins.

Authors:  Mickael Malnoy; Roberto Viola; Min-Hee Jung; Ok-Jae Koo; Seokjoong Kim; Jin-Soo Kim; Riccardo Velasco; Chidananda Nagamangala Kanchiswamy
Journal:  Front Plant Sci       Date:  2016-12-20       Impact factor: 5.753

Review 6.  Editing the Neuronal Genome: a CRISPR View of Chromatin Regulation in Neuronal Development, Function, and Plasticity.

Authors:  Marty G Yang; Anne E West
Journal:  Yale J Biol Med       Date:  2016-12-23

Review 7.  CRISPR-Cas9: Tool for Qualitative and Quantitative Plant Genome Editing.

Authors:  Ali Noman; Muhammad Aqeel; Shuilin He
Journal:  Front Plant Sci       Date:  2016-11-21       Impact factor: 5.753

Review 8.  Progress and Prospects of CRISPR/Cas Systems in Insects and Other Arthropods.

Authors:  Dan Sun; Zhaojiang Guo; Yong Liu; Youjun Zhang
Journal:  Front Physiol       Date:  2017-09-06       Impact factor: 4.566

Review 9.  Programmable Genome Editing Tools and their Regulation for Efficient Genome Engineering.

Authors:  Tuhin Kumar Guha; Alvan Wai; Georg Hausner
Journal:  Comput Struct Biotechnol J       Date:  2017-01-12       Impact factor: 7.271

Review 10.  CRISPR/Cas9 Technology as an Emerging Tool for Targeting Amyotrophic Lateral Sclerosis (ALS).

Authors:  Ewa Kruminis-Kaszkiel; Judyta Juranek; Wojciech Maksymowicz; Joanna Wojtkiewicz
Journal:  Int J Mol Sci       Date:  2018-03-19       Impact factor: 5.923

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