Literature DB >> 27165706

Differential stability of DNA based on salt concentration.

Arghya Maity1, Amar Singh1, Navin Singh2.   

Abstract

Intracellular positive ions neutralize negative charges on the phosphates of a DNA strand, conferring greater strength on the hydrogen bonds that connect complementary strands into a double helix and so confer enhanced stability. Beyond a certain value of salt concentration, the DNA molecule displays an unstable nature in vivo as well as in vitro. We consider a wide range of salt concentrations and study the stability of the DNA double helix using a statistical model. Through numerical calculations, we attempt to explain the different behavior exhibited by DNA molecules in this range. We compare our results with experimental data and find a close agreement.

Entities:  

Keywords:  DNA denaturation; PBD model; Salt

Mesh:

Substances:

Year:  2016        PMID: 27165706     DOI: 10.1007/s00249-016-1132-3

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  37 in total

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Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-09-20

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Authors:  Dana Branzei; Marco Foiani
Journal:  Curr Opin Cell Biol       Date:  2005-10-13       Impact factor: 8.382

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Authors:  T S van Erp; S Cuesta-López; M Peyrard
Journal:  Eur Phys J E Soft Matter       Date:  2006-09-07       Impact factor: 1.890

6.  Entropy-driven transition in a one-dimensional system.

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Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1995-05

7.  Condensation prevails over B-A transition in the structure of DNA at low humidity.

Authors:  Silvia Hormeño; Fernando Moreno-Herrero; Borja Ibarra; José L Carrascosa; José M Valpuesta; J Ricardo Arias-Gonzalez
Journal:  Biophys J       Date:  2011-04-20       Impact factor: 4.033

8.  Thermal equivalence of DNA duplexes for probe design.

Authors:  Gerald Weber; Niall Haslam; Jonathan W Essex; Cameron Neylon
Journal:  J Phys Condens Matter       Date:  2008-12-17       Impact factor: 2.333

9.  Thermal and mechanical properties of a DNA model with solvation barrier.

Authors:  R Tapia-Rojo; J J Mazo; F Falo
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-09-27

10.  Twist versus nonlinear stacking in short DNA molecules.

Authors:  Marco Zoli
Journal:  J Theor Biol       Date:  2014-03-29       Impact factor: 2.691

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  2 in total

1.  Nonalternating purine pyrimidine sequences can form stable left-handed DNA duplex by strong topological constraint.

Authors:  Lin Li; Yaping Zhang; Wanzhi Ma; Hui Chen; Mengqin Liu; Ran An; Bingxiao Cheng; Xingguo Liang
Journal:  Nucleic Acids Res       Date:  2022-01-25       Impact factor: 16.971

2.  Morphological Phenotypes, Cell Division, and Gene Expression of Escherichia coli under High Concentration of Sodium Sulfate.

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Journal:  Microorganisms       Date:  2022-01-25
  2 in total

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