| Literature DB >> 27165031 |
Jin Hyoung Cho1, Ra Ham Lee1, Young-Joo Jeon1,2, Seon-Min Park3, Jae-Cheon Shin3, Seok-Ho Kim4, Jin Young Jeong5, Hyun-Sung Kang6, Nag-Jin Choi7, Kang Seok Seo6, Young Sik Cho8, MinSeok S Kim9, Sungho Ko10, Jae-Min Seo11, Seung-Youp Lee12, Jung-Hyun Shim13,14, Jung-Il Chae1.
Abstract
Meat quality is a complex trait influenced by many factors, including genetics, nutrition, feeding environment, animal handling, and their interactions. To elucidate relevant factors affecting pork quality associated with oxidative stress and muscle development, we analyzed protein expression in high quality longissimus dorsi muscles (HQLD) and low quality longissimus dorsi muscles (LQLD) from Duroc pigs by liquid chromatographytandem mass spectrometry (LC-MS/MS)-based proteomic analysis. Between HQLD (n = 20) and LQLD (n = 20) Duroc pigs, 24 differentially expressed proteins were identified by LC-MS/MS. A total of 10 and 14 proteins were highly expressed in HQLD and LQLD, respectively. The 24 proteins have putative functions in the following seven categories: catalytic activity (31%), ATPase activity (19%), oxidoreductase activity (13%), cytoskeletal protein binding (13%), actin binding (12%), calcium ion binding (6%), and structural constituent of muscle (6%). Silver-stained image analysis revealed significant differential expression of lactate dehydrogenase A (LDHA) between HQLD and LQLD Duroc pigs. LDHA was subjected to in vitro study of myogenesis under oxidative stress conditions and LDH activity assay to verification its role in oxidative stress. No significant difference of mRNA expression level of LDHA was found between normal and oxidative stress condition. However, LDH activity was significantly higher under oxidative stress condition than at normal condition using in vitro model of myogenesis. The highly expressed LDHA was positively correlated with LQLD. Moreover, LDHA activity increased by oxidative stress was reduced by antioxidant resveratrol. This paper emphasizes the importance of differential expression patterns of proteins and their interaction for the development of meat quality traits. Our proteome data provides valuable information on important factors which might aid in the regulation of muscle development and the improvement of meat quality in longissimus dorsi muscles of Duroc pigs under oxidative stress conditions.Entities:
Keywords: Duroc; Liquid Chromatography-tandem Mass Spectrometry; Longissimus dorsi Muscle; Meat Quality; Oxidative Stress
Year: 2016 PMID: 27165031 PMCID: PMC5088387 DOI: 10.5713/ajas.16.0050
Source DB: PubMed Journal: Asian-Australas J Anim Sci ISSN: 1011-2367 Impact factor: 2.509
Primer sequences used to generate templates for reverse transcription polymerase chain reaction
| Gene name | Symbol | GenBank ID | Primer sequence (5′→3′) | Size (bp) |
|---|---|---|---|---|
| Myogenic differentiation | NM_010866 | F: GAT GGC ATG ATG GAT TAC AGC | 528 | |
| Myogenin | NM_031189 | F: GCT CAG CTC CCT CAA CCA G | 424 | |
| Glyceraldehyde-3-phosphate dehydrogenase | NM_008084 | F: ACC ACA GTC CAT GCC ATC AC | 452 |
Phenotypic record of meat quality traits in Duroc pigs
| Traits | N | Mean | Min | Max | Median | Std |
|---|---|---|---|---|---|---|
| Eye muscle area (cm2) | 199 | 28.13 | 20.99 | 33.00 | 28.15 | 0.218 |
| Age at 90 kg (d) | 199 | 142.97 | 123 | 171 | 142 | 0.960 |
| Average daily gain (g) | 199 | 643.34 | 493.30 | 780.00 | 641.75 | 5.806 |
| Backfat thickness (mm) | 199 | 14.78 | 10.26 | 24.23 | 14.48 | 0.184 |
| Loin depth (mm) | 199 | 55.61 | 50.40 | 60.40 | 55.80 | 0.189 |
| Weight at end of test day (kg) | 199 | 99.18 | 75.00 | 120.00 | 100.00 | 0.861 |
| Meat quality characteristics | ||||||
| pH 24h | 199 | 5.71 | 5.43 | 6.03 | 5.71 | 0.109 |
| Brightness | 199 | 54.50 | 46.71 | 62.25 | 54.40 | 2.981 |
| Redness | 199 | 16.98 | 9.75 | 21.10 | 17.27 | 1.984 |
| Yellowness | 199 | 11.31 | 5.45 | 16.29 | 11.52 | 2.076 |
| Water holding capacity | 199 | 73.55 | 56.99 | 89.04 | 72.80 | 6.874 |
| Cooking loss | 199 | 14.53 | 6.65 | 22.95 | 14.64 | 2.998 |
| Moisture | 199 | 72.76 | 63.67 | 79.33 | 73.00 | 1.922 |
| Color, sensory test | 199 | 5.37 | 2.50 | 7.50 | 5.42 | 0.873 |
| Flavor, sensory test | 199 | 5.28 | 1.25 | 8.00 | 5.33 | 1.187 |
| Tenderness, sensory test | 199 | 5.28 | 1.25 | 8.50 | 5.33 | 1.450 |
| Juiciness, sensory test | 199 | 5.10 | 1.25 | 9.75 | 5.25 | 1.506 |
| Palatability, sensory test | 199 | 5.13 | 1.25 | 8.50 | 5.25 | 1.491 |
| Shear force | 199 | 6.24 | 2.46 | 12.94 | 5.63 | 2.215 |
| Biochemical measures | ||||||
| Palmitic acid | 199 | 25.58 | 22.74 | 28.08 | 25.68 | 1.044 |
| Oleic acid | 199 | 35.89 | 10.89 | 44.91 | 40.00 | 10.118 |
| Stearic acid | 199 | 17.19 | 9.72 | 43.71 | 13.17 | 9.799 |
| Linolenic acid | 199 | 8.42 | 5.31 | 13.06 | 8.06 | 1.743 |
High- or low-meat quality traits of longissimus dorsi muscles in Duroc pigs
| Traits | N | Mean | Min | Max | Median | Std |
|---|---|---|---|---|---|---|
| High quality of | ||||||
| pH 24h | 20 | 5.82 | 5.73 | 6.03 | 5.80 | 0.083 |
| Water holding capacity | 20 | 73.96 | 65.60 | 85.75 | 73.42 | 5.699 |
| Cooking loss | 20 | 14.40 | 7.30 | 21.45 | 13.82 | 3.457 |
| Moisture | 20 | 72.95 | 70.17 | 75.33 | 72.67 | 1.369 |
| Shear force | 20 | 6.44 | 3.83 | 10.55 | 6.02 | 2.229 |
| Low quality of | ||||||
| pH 24h | 20 | 5.60 | 5.55 | 5.64 | 5.60 | 0.031 |
| Water holding capacity | 20 | 73.76 | 62.33 | 87.35 | 72.60 | 7.135 |
| Cooking loss | 20 | 15.39 | 9.27 | 22.95 | 15.41 | 2.850 |
| Moisture | 20 | 72.74 | 68.00 | 75.00 | 73.00 | 1.713 |
| Shear force | 20 | 6.14 | 2.46 | 10.29 | 5.60 | 2.036 |
Figure 1Protein profiles of high quality longissimus dorsi muscles (HQLD) and low quality longissimus dorsi muscles (LQLD) from Duroc pigs by image analysis. (A) The overall patterns of total protein bands from individuals. All gels were visualized by sliver staining. (B) Two different protein spots were identified by a mass spectrometric analysis. a*: MYBPC2, myosin binding protein C; b#: LDHA, lactate dehydrogenase A.
Figure 2Ontological classifications of differentially regulated proteins in high quality longissimus dorsi muscles (HQLD) and low quality longissimus dorsi muscles (LQLD) from Duroc pigs. Of the total 24 identified proteins, 10 and 14 proteins were highly expressed in HQLD and LQLD, respectively. (A) The identified proteins were clustered into 7 categories based on information obtained from DAVID gene ontology (GO) database; (B) The identified proteins were clustered into 3 categories based on their molecular function; (C) The identified proteins were clustered into 5 categories based on their biological processes.
List of differentially expressed genes on high- and low quality of longissimus dorsi muscles in duroc pigs
| No | UniProt | UniGene | Protein identified | Gene name | pI | MW (kDa) | Seq. Cov (%) | Individual ion score | |
|---|---|---|---|---|---|---|---|---|---|
|
| |||||||||
| HQLD | LQLD | ||||||||
| Highly expressed genes in HQLD | |||||||||
| 1 | Q5S1S4 | Ssc.10960 | Carbonic anhydrase 3 | 7.85 | 29.4 | 53.46 | 150.33 | 82.96 | |
| 2 | F1RKI3 | Ssc:100518898 | histidine triad nucleotide-binding protein 1 | 6.87 | 13.7 | 11.11 | 3.48 | 0 | |
| 3 | Q9TSX9 | Ssc.2979 | Peroxiredoxin-6 | 6.01 | 25 | 7.59 | 2.67 | 0 | |
| 4 | D3GGC9 | Ssc.3835 | Actinin-associated LIM protein 3 | 8.12 | 30.5 | 5.42 | 5.96 | 2.24 | |
| 5 | F1RGK5 | Ssc.51787 | Tropomyosin alpha-3 chain | 4.75 | 28.9 | 5.24 | 7.13 | 0 | |
| 6 | P34930 | Ssc.5145 | Heat shock 70 kDa protein 1A | 5.73 | 70 | 3.12 | 12.17 | 4.39 | |
| 7 | Q04967 | Ssc.114 | Heat shock 70 kDa protein 6 | 6.06 | 71.1 | 2.95 | 9.69 | 3.98 | |
| 8 | F1SEN8 | Ssc.97236 | LIM domain-binding protein 3 | 7.78 | 75.8 | 1.68 | 2.83 | 2.13 | |
| 9 | F1RH20 | Ssc.83876 | Myosin-binding protein C, fast-type | 6.55 | 127.6 | 1.58 | 2.57 | 0 | |
| 10 | F1SMN5 | Ssc.46794 | Filamin-C | 5.96 | 290.2 | 0.44 | 4.59 | 0 | |
| Highly expressed genes in LQLD | |||||||||
| 11 | P00355 | Ssc.16135 | Glyceraldehyde-3-phosphate dehydrogenase | 8.35 | 35.8 | 46.85 | 81.05 | 447.46 | |
| 12 | P00339 | Ssc.50275 | L-lactate dehydrogenase A | 8.07 | 36.6 | 39.76 | 129.85 | 230.24 | |
| 13 | F1SKJ8 | Ssc.26154 | Parvalbumin 1 | 5.07 | 12.1 | 20.91 | 15.89 | 22.65 | |
| 14 | F1SLA0 | Ssc.279 | ATP synthase subunit beta | 5.27 | 56.3 | 8.71 | 0 | 4.89 | |
| 15 | Q9GJT2 | Ssc.217 | S-formylglutathione hydrolase | 7.02 | 31.5 | 7.45 | 0 | 2.32 | |
| 16 | F1RFH9 | Ssc.55270 | Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 | 5.29 | 109.1 | 6.45 | 1.96 | 21.11 | |
| 17 | Q06AA5 | Ssc.26272 | Tetraspanin-9 | 7.44 | 26.8 | 6.28 | 0 | 2.32 | |
| 18 | F1S6Q7 | Ssc:100523423 | ATP synthase subunit delta, mitochondrial -like | 5.25 | 17.5 | 5.36 | 0 | 4.15 | |
| 19 | A1X898 | Ssc.97027 | Procollagen-proline 2-oxoglutarate-4-dioxygenase | 6.01 | 60.9 | 4.49 | 0 | 2.47 | |
| 20 | F1RFU5 | Ssc.3588 | Aspartate aminotransferase | 8.73 | 24.1 | 3.72 | 0 | 4.7 | |
| 21 | E7EBY5 | Ssc.26469 | MACRO domain containing protein 1 | 9.22 | 35.1 | 3.69 | 2.39 | 4.3 | |
| 22 | Q2XQV4 | Ssc.11147 | Aldehyde dehydrogenase, mitochondrial | 6.87 | 56.9 | 3.26 | 3.59 | 4.95 | |
| 23 | I3LL15 | Ssc.16302 | Uricase | 8.32 | 34.9 | 2.63 | 1.78 | 4.37 | |
| 24 | F1SLR6 | Ssc.5041 | Putative ribosomal RNA methyltransferase NOP2 | 9.06 | 90.2 | 1.95 | 0 | 6.07 | |
pI, isoelectric point of the protein; MW, molecular weight of the protein; Seq. Cov, percentage of sequence coverage; HQLD, high quality of longissimus dorsi muscles; LQLD, low quality of longissimus dorsi muscles.
UniProt, Accession number in the UniProt database.
UniGene, UniGene number from NCBI (National Center for Biotechnology Information) database.
Individual ion score, TurboSEQUEST or gMASCOT score.
Figure 3Gross changes and cell viability in myogenic differentiation under oxidative stress condition. (A) Morphological changes of myoblast during myogenesis. Arrow head and dashed lines indicating myoblast with mono nucleus and myotube with three or more nuclei, respectively; (B) Cytotoxic effects of H2O2 in C2C12 treated with the various concentrations of H2O2 (12.5 μM to 1 mM). Data represented mean value of three independent experiments; bars, standard deviation. * Significantly different compared to untreated conditions (24 h); #, significantly different compared to untreated conditions (48 h) (n = 3, p<0.0001); (C) Light microscopy-based images of undifferentiated (day 0) proliferating C2C12 myoblasts and differentiating cells at various time points (up to day 7) under normal and oxidative stress conditions (H2O2 [200 μM]); (D) Immunocytochemistry presented the MYH expression levels of undifferentiated (day 0) and differentiated (day 5). GM, growth medium; DM, differentiation medium. (E) Oxidative stress induced down-regulation of Myog gene expression and continuous up-regulation of MyoD gene expression with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) as a control; (F) Oxidative stress induced down-regulation of Myog protein expression and continuous up-regulation of MyoD protein expression with β-actin as a control. Student’s t test was performed to evaluate statistical significance (ns, non-significant; *** p<0.0001; mean±standard error of the mean; n = 3).
Figure 4Gene and protein expression levels on high quality longissimus dorsi muscles (HQLD) and low quality longissimus dorsi muscles (LQLD) depending on oxidative stress. Myoblast and myotube cDNA and protein were determined by real-time PCR analysis and western blot analysis, respectively. (A) The quantitative differences of lactate dehydrogenase A (LDHA) at the transcriptional level were measured by real-time PCR during myogenesis with β-actin as control; (B) Cytotoxic effects of resveratrol (RSV) in C2C12 treated with various concentrations of RSV (6.25 μM to 100 μM). Data represented mean value of three independent experiments; bars, standard deviation. * Significantly different compared with untreated conditions (24 h); #, significantly different compared to untreated conditions (48 h) (n = 3, p<0.0001); (C) Quantitative differences of LDHA at the transcriptional level were measured by real-time PCR in RSV-treated C2C12 during myogenesis.
Figure 5Antioxidant effect of resveratrol in lactate dehydrogenase activity and myogenesis. (A) Difference of lactate dehydrogenase (LDH) activity between high quality longissimus dorsi muscles (HQLD) and low quality longissimus dorsi muscles (LQLD) from individual six groups of Duroc pigs. (B) In vitro model of myogenesis under oxidative stress condition and changes of lactate dehydrogenase activity by resveratrol (RSV) treatment. Student’s t test was performed to evaluate statistical significance (*** p<0.0001; mean±standard error of the mean; n = 3); (C) Patterns of myogenic differentiation (MyoD) and myogenin (Myog) expression depending on oxidative stress condition and RSV treatment during myogenesis by immunocytochemistry; (D) Patterns of MyoD and Myog expression (gene and protein levels) depending on oxidative stress condition and RSV treatment during myogenesis by reverse transcription polymerase chain reaction and western blot analysis.