Literature DB >> 27162355

Ancient and modern DNA reveal dynamics of domestication and cross-continental dispersal of the dromedary.

Faisal Almathen1, Pauline Charruau2, Elmira Mohandesan3, Joram M Mwacharo4, Pablo Orozco-terWengel5, Daniel Pitt5, Abdussamad M Abdussamad6, Margarethe Uerpmann7, Hans-Peter Uerpmann7, Bea De Cupere8, Peter Magee9, Majed A Alnaqeeb10, Bashir Salim11, Abdul Raziq12, Tadelle Dessie13, Omer M Abdelhadi14, Mohammad H Banabazi15, Marzook Al-Eknah16, Chris Walzer17, Bernard Faye18, Michael Hofreiter19, Joris Peters20, Olivier Hanotte21, Pamela A Burger22.   

Abstract

Dromedaries have been fundamental to the development of human societies in arid landscapes and for long-distance trade across hostile hot terrains for 3,000 y. Today they continue to be an important livestock resource in marginal agro-ecological zones. However, the history of dromedary domestication and the influence of ancient trading networks on their genetic structure have remained elusive. We combined ancient DNA sequences of wild and early-domesticated dromedary samples from arid regions with nuclear microsatellite and mitochondrial genotype information from 1,083 extant animals collected across the species' range. We observe little phylogeographic signal in the modern population, indicative of extensive gene flow and virtually affecting all regions except East Africa, where dromedary populations have remained relatively isolated. In agreement with archaeological findings, we identify wild dromedaries from the southeast Arabian Peninsula among the founders of the domestic dromedary gene pool. Approximate Bayesian computations further support the "restocking from the wild" hypothesis, with an initial domestication followed by introgression from individuals from wild, now-extinct populations. Compared with other livestock, which show a long history of gene flow with their wild ancestors, we find a high initial diversity relative to the native distribution of the wild ancestor on the Arabian Peninsula and to the brief coexistence of early-domesticated and wild individuals. This study also demonstrates the potential to retrieve ancient DNA sequences from osseous remains excavated in hot and dry desert environments.

Entities:  

Keywords:  Camelus dromedarius; anthropogenic admixture; demographic history; paleogenetics; wild dromedary

Mesh:

Substances:

Year:  2016        PMID: 27162355      PMCID: PMC4914195          DOI: 10.1073/pnas.1519508113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Genetic evidence for Near-Eastern origins of European cattle.

Authors:  C S Troy; D E MacHugh; J F Bailey; D A Magee; R T Loftus; P Cunningham; A T Chamberlain; B C Sykes; D G Bradley
Journal:  Nature       Date:  2001-04-26       Impact factor: 49.962

2.  How the akkadian empire was hung out to dry.

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3.  Bayesian computation and model selection without likelihoods.

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Journal:  Genetics       Date:  2009-09-28       Impact factor: 4.562

Review 4.  The future of ancient DNA: Technical advances and conceptual shifts.

Authors:  Michael Hofreiter; Johanna L A Paijmans; Helen Goodchild; Camilla F Speller; Axel Barlow; Gloria G Fortes; Jessica A Thomas; Arne Ludwig; Matthew J Collins
Journal:  Bioessays       Date:  2014-11-21       Impact factor: 4.345

5.  Camelid genomes reveal evolution and adaptation to desert environments.

Authors:  Huiguang Wu; Xuanmin Guang; Mohamed B Al-Fageeh; Junwei Cao; Shengkai Pan; Huanmin Zhou; Li Zhang; Mohammed H Abutarboush; Yanping Xing; Zhiyuan Xie; Ali S Alshanqeeti; Yanru Zhang; Qiulin Yao; Badr M Al-Shomrani; Dong Zhang; Jiang Li; Manee M Manee; Zili Yang; Linfeng Yang; Yiyi Liu; Jilin Zhang; Musaad A Altammami; Shenyuan Wang; Lili Yu; Wenbin Zhang; Sanyang Liu; La Ba; Chunxia Liu; Xukui Yang; Fanhua Meng; Shaowei Wang; Lu Li; Erli Li; Xueqiong Li; Kaifeng Wu; Shu Zhang; Junyi Wang; Ye Yin; Huanming Yang; Abdulaziz M Al-Swailem; Jun Wang
Journal:  Nat Commun       Date:  2014-10-21       Impact factor: 14.919

6.  Evaluating a putative bottleneck in a population of bowhead whales from patterns of microsatellite diversity and genetic disequilibria.

Authors:  A P Rooney; R L Honeycutt; S K Davis; J N Derr
Journal:  J Mol Evol       Date:  1999-11       Impact factor: 2.395

7.  Genetic diversity of donkey populations from the putative centers of domestication.

Authors:  S Rosenbom; V Costa; N Al-Araimi; E Kefena; A S Abdel-Moneim; M A Abdalla; A Bakhiet; A Beja-Pereira
Journal:  Anim Genet       Date:  2014-12-16       Impact factor: 3.169

8.  Reconstructing the origin and spread of horse domestication in the Eurasian steppe.

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-07       Impact factor: 11.205

9.  Ancient DNA and population turnover in southern levantine pigs--signature of the sea peoples migration?

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Journal:  Sci Rep       Date:  2013-11-04       Impact factor: 4.379

10.  Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle.

Authors:  Stephen D E Park; David A Magee; Paul A McGettigan; Matthew D Teasdale; Ceiridwen J Edwards; Amanda J Lohan; Alison Murphy; Martin Braud; Mark T Donoghue; Yuan Liu; Andrew T Chamberlain; Kévin Rue-Albrecht; Steven Schroeder; Charles Spillane; Shuaishuai Tai; Daniel G Bradley; Tad S Sonstegard; Brendan J Loftus; David E MacHugh
Journal:  Genome Biol       Date:  2015-10-26       Impact factor: 13.583

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  31 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-02       Impact factor: 11.205

2.  Reply to Marom et al.: Mitochondrial panmixia in dromedaries predates ancient caravan trading.

Authors:  Pamela A Burger; Joris Peters; Peter Magee; Olivier Hanotte
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-02       Impact factor: 11.205

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6.  Mitogenome Sequencing in the Genus Camelus Reveals Evidence for Purifying Selection and Long-term Divergence between Wild and Domestic Bactrian Camels.

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Journal:  Sci Rep       Date:  2017-08-30       Impact factor: 4.379

7.  Combined hybridization capture and shotgun sequencing for ancient DNA analysis of extinct wild and domestic dromedary camel.

Authors:  Elmira Mohandesan; Camilla F Speller; Joris Peters; Hans-Peter Uerpmann; Margarethe Uerpmann; Bea De Cupere; Michael Hofreiter; Pamela A Burger
Journal:  Mol Ecol Resour       Date:  2016-08-01       Impact factor: 7.090

8.  Genome-Wide Diversity, Population Structure and Demographic History of Dromedaries in the Central Desert of Iran.

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Journal:  Genes (Basel)       Date:  2020-05-29       Impact factor: 4.096

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Authors:  Knut H Røed; Kjersti S Kvie; Robert J Losey; Pavel A Kosintsev; Anne K Hufthammer; Mark J Dwyer; Vasiliy Goncharov; Konstantin B Klokov; Dmitry V Arzyutov; Andrei Plekhanov; David G Anderson
Journal:  Ecol Evol       Date:  2020-04-28       Impact factor: 2.912

10.  Multiomic analysis of the Arabian camel (Camelus dromedarius) kidney reveals a role for cholesterol in water conservation.

Authors:  Fernando Alvira-Iraizoz; Benjamin T Gillard; Panjiao Lin; Alex Paterson; Audrys G Pauža; Mahmoud A Ali; Ammar H Alabsi; Pamela A Burger; Naserddine Hamadi; Abdu Adem; David Murphy; Michael P Greenwood
Journal:  Commun Biol       Date:  2021-06-23
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