Literature DB >> 27160574

Genomic Analysis of the Extremely Halophilic Archaeon Halobacterium noricense CBA1132 Isolated from Solar Salt That Is an Essential Material for Fermented Foods.

Seul Ki Lim1, Joon Yong Kim2, Hye Seon Song2, Min-Sung Kwon1, Jieun Lee1, Young Jun Oh1, Young-Do Nam3, Myung-Ji Seo4, Dong-Gi Lee2, Jong-Soon Choi2,5, Changmann Yoon2, Eunju Sohn2,5, Md Arif-Ur Rahman2,5, Seong Woon Roh2, Hak-Jong Choi1.   

Abstract

The extremely halophilic archaeon Halobacterium noricense is a member of the genus Halobacterium. Strain CBA1132 (= KCCM 43183, JCM 31150) was isolated from solar salt. The genome of strain CBA1132 assembled with 4 contigs, including three rRNA genes, 44 tRNA genes, and 3,208 open reading frames. Strain CBA1132 had nine putative CRISPRs and the genome contained genes encoding metal resistance determinants: copper-translocating P-type ATPase (CtpA), arsenical pump-driving ATPase (ArsA), arsenate reductase (ArsC), and arsenical resistance operon repressor (ArsR). Strain CBA1132 was related to Halobacterium noricense, with 99.2% 16S rRNA gene sequence similarity. Based on the comparative genomic analysis, strain CBA1132 has distinctly evolved; moreover, essential genes related to nitrogen metabolism were only detected in the genome of strain CBA1132 among the reported genomes in the genus Halobacterium. This genome sequence of Halobacterium noricense CBA1132 may be of use in future molecular biological studies.

Entities:  

Keywords:  Haloarchaea; Halobacterium; extremely halophilic archaea; genomic analysis

Mesh:

Substances:

Year:  2016        PMID: 27160574     DOI: 10.4014/jmb.1603.03010

Source DB:  PubMed          Journal:  J Microbiol Biotechnol        ISSN: 1017-7825            Impact factor:   2.351


  3 in total

1.  Genomic analysis of heavy metal-resistant Halobacterium salinarum isolated from Sfax solar saltern sediments.

Authors:  Houda Baati; Mariem Siala; Chafai Azri; Emna Ammar; Christopher Dunlap; Mohamed Trigui
Journal:  Extremophiles       Date:  2022-07-16       Impact factor: 3.035

2.  Whole-genome comparison between the type strain of Halobacterium salinarum (DSM 3754T ) and the laboratory strains R1 and NRC-1.

Authors:  Friedhelm Pfeiffer; Gerald Losensky; Anita Marchfelder; Bianca Habermann; Mike Dyall-Smith
Journal:  Microbiologyopen       Date:  2019-12-03       Impact factor: 3.139

3.  ODFM, an omics data resource from microorganisms associated with fermented foods.

Authors:  Tae Woong Whon; Seung Woo Ahn; Sungjin Yang; Joon Yong Kim; Yeon Bee Kim; Yujin Kim; Ji-Man Hong; Hojin Jung; Yoon-E Choi; Se Hee Lee; Seong Woon Roh
Journal:  Sci Data       Date:  2021-04-20       Impact factor: 6.444

  3 in total

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