Literature DB >> 27160483

Advanced diagnostic genetic testing in inherited retinal disease: experience from a single tertiary referral centre in the UK National Health Service.

K N Khan1,2,3, R Chana1,2, N Ali1, G Wright1,2, A R Webster1,2, A T Moore1,2, M Michaelides1,2.   

Abstract

In 2013, as part of our genetic investigation of patients with inherited retinal disease, we utilized multigene panel testing of 105 genes known to cause retinal disease in our patient cohorts. This test was performed in a UK National Health Service (NHS) accredited laboratory. The results of all multigene panel tests requested between 1.4.13 and 31.8.14 were retrospectively reviewed. All patients had been previously seen at Moorfields Eye Hospital, London, UK and diagnosed with an inherited retinal dystrophy after clinical examination and detailed retinal imaging. The results were categorized into three groups: (i) Testing helped establish a certain molecular diagnosis in 45 out of 115 (39%). Variants in USH2A (n = 6) and RP1 (n = 4) were most common. (ii) Definitive conclusions could not be drawn from molecular testing alone in 13 out of 115 (11%) as either insufficient pathogenic variants were discovered or those identified were not consistent with the phenotype. (iii) Testing did not identify any pathogenic variants responsible for the phenotype in 57 out of 115 (50%). Multigene panel testing performed in an NHS setting has enabled a molecular diagnosis to be confidently made in 40% of cases. Novel variants accounted for 38% of all identified variants. Detailed retinal phenotyping helped the interpretation of specific variants. Additional care needs to be taken when assessing polymorphisms in genes that have been infrequently associated with disease, as historical techniques were not as rigorous as contemporary ones. Future iterations of sequencing are likely to offer higher sensitivity, testing a broader range of genes, more rapidly and at a reduced cost.
© 2016 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Entities:  

Keywords:  NGS; diagnostics; genetics; retinal dystrophy

Mesh:

Year:  2016        PMID: 27160483     DOI: 10.1111/cge.12798

Source DB:  PubMed          Journal:  Clin Genet        ISSN: 0009-9163            Impact factor:   4.438


  7 in total

1.  Comprehensive Rare Variant Analysis via Whole-Genome Sequencing to Determine the Molecular Pathology of Inherited Retinal Disease.

Authors:  Keren J Carss; Gavin Arno; Marie Erwood; Jonathan Stephens; Alba Sanchis-Juan; Sarah Hull; Karyn Megy; Detelina Grozeva; Eleanor Dewhurst; Samantha Malka; Vincent Plagnol; Christopher Penkett; Kathleen Stirrups; Roberta Rizzo; Genevieve Wright; Dragana Josifova; Maria Bitner-Glindzicz; Richard H Scott; Emma Clement; Louise Allen; Ruth Armstrong; Angela F Brady; Jenny Carmichael; Manali Chitre; Robert H H Henderson; Jane Hurst; Robert E MacLaren; Elaine Murphy; Joan Paterson; Elisabeth Rosser; Dorothy A Thompson; Emma Wakeling; Willem H Ouwehand; Michel Michaelides; Anthony T Moore; Andrew R Webster; F Lucy Raymond
Journal:  Am J Hum Genet       Date:  2016-12-29       Impact factor: 11.025

2.  Searching the second hit in patients with inherited retinal dystrophies and monoallelic variants in ABCA4, USH2A and CEP290 by whole-gene targeted sequencing.

Authors:  María González-Del Pozo; Marta Martín-Sánchez; Nereida Bravo-Gil; Cristina Méndez-Vidal; Ángel Chimenea; Enrique Rodríguez-de la Rúa; Salud Borrego; Guillermo Antiñolo
Journal:  Sci Rep       Date:  2018-09-06       Impact factor: 4.379

3.  Molecular genetic analysis using targeted NGS analysis of 677 individuals with retinal dystrophy.

Authors:  Cathrine Jespersgaard; Mingyan Fang; Mette Bertelsen; Xiao Dang; Hanne Jensen; Yulan Chen; Niels Bech; Lanlan Dai; Thomas Rosenberg; Jianguo Zhang; Lisbeth Birk Møller; Zeynep Tümer; Karen Brøndum-Nielsen; Karen Grønskov
Journal:  Sci Rep       Date:  2019-02-04       Impact factor: 4.379

4.  Panel-based genetic testing for inherited retinal disease screening 176 genes.

Authors:  Leo H N Sheck; Simona D Esposti; Omar A Mahroo; Gavin Arno; Nikolas Pontikos; Genevieve Wright; Andrew R Webster; Kamron N Khan; Michel Michaelides
Journal:  Mol Genet Genomic Med       Date:  2021-03-22       Impact factor: 2.473

5.  Genetic Testing of Inherited Retinal Disease in Australian Private Tertiary Ophthalmology Practice.

Authors:  Sena A Gocuk; Yuanzhang Jiao; Alexis Ceecee Britten-Jones; Nathan M Kerr; Lyndell Lim; Simon Skalicky; Richard Stawell; Lauren N Ayton; Heather G Mack
Journal:  Clin Ophthalmol       Date:  2022-04-13

6.  Panel-based next-generation sequencing identifies novel mutations in Bulgarian patients with inherited retinal dystrophies.

Authors:  Kunka Kamenarova; Kalina Mihova; Nevyana Veleva; Elena Mermeklieva; Bilyana Mihaylova; Galina Dimitrova; Alexander Oscar; Iliyan Shandurkov; Sylvia Cherninkova; Radka Kaneva
Journal:  Mol Genet Genomic Med       Date:  2022-06-03       Impact factor: 2.473

7.  Late-onset retinal degeneration pathology due to mutations in CTRP5 is mediated through HTRA1.

Authors:  Anil Chekuri; Katarzyna Zientara-Rytter; Angel Soto-Hermida; Shyamanga Borooah; Marina Voronchikhina; Pooja Biswas; Virender Kumar; David Goodsell; Caroline Hayward; Peter Shaw; Chloe Stanton; Donita Garland; Suresh Subramani; Radha Ayyagari
Journal:  Aging Cell       Date:  2019-08-05       Impact factor: 9.304

  7 in total

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