Literature DB >> 27160104

Identification of Differentially Expressed Genes in Kawasaki Disease Patients as Potential Biomarkers for IVIG Sensitivity by Bioinformatics Analysis.

Lan He1, Youyu Sheng2, Chunyun Huang2, Guoying Huang3.   

Abstract

Kawasaki disease (KD) is a leading cause of acquired heart disease predominantly affecting infants and young children. Intravenous immunoglobulin (IVIG) is applied as the most favorable treatment against KD, but IVIG resistant remains exist. Although several clinical scoring systems have been developed to identify children at highest risk of IVIG resistance, there is a need to identify sufficiently sensitive biomarkers for IVIG treatment. Some differentially expressed genes (DEGs) could be the promising potential biomarkers for IVIG-related sensitivity diagnosis. We employed a systematic and integrative bioinformatics framework to identify such kind of genes. The performance of the candidate genes was evaluated by hierarchical clustering, ROC analysis and literature mining. By analyzing three datasets of KD patients, 34 DEGs of the three groups have been found to be associated with IVIG-related sensitivity. A module of 12 genes could predict resistant group patients with high accuracy, and a module of ten genes could predict responsive group patients effectively with accuracy of 96 %. And three of them are most likely to serve as drug targets or diagnostic biomarkers in the future. Compared with unsupervised hierarchical clustering analysis, our modules could distinct IVIG-resistant patients efficiently. Two groups of DEGs could predict IVIG-related sensitivity with high accuracy, which are potential biomarkers for the clinical diagnosis and prediction of IVIG treatment response in KD patients, improving the prognosis of patients.

Entities:  

Keywords:  Biomarker; Differentially expressed genes (DEGs); IVIG-related sensitivity; Kawasaki disease

Mesh:

Substances:

Year:  2016        PMID: 27160104     DOI: 10.1007/s00246-016-1381-z

Source DB:  PubMed          Journal:  Pediatr Cardiol        ISSN: 0172-0643            Impact factor:   1.655


  51 in total

1.  Genome-wide association study identifies FCGR2A as a susceptibility locus for Kawasaki disease.

Authors:  Chiea Chuen Khor; Sonia Davila; Willemijn B Breunis; Yi-Ching Lee; Chisato Shimizu; Victoria J Wright; Rae S M Yeung; Dennis E K Tan; Kar Seng Sim; Jie Jin Wang; Tien Yin Wong; Junxiong Pang; Paul Mitchell; Rolando Cimaz; Nagib Dahdah; Yiu-Fai Cheung; Guo-Ying Huang; Wanling Yang; In-Sook Park; Jong-Keuk Lee; Jer-Yuarn Wu; Michael Levin; Jane C Burns; David Burgner; Taco W Kuijpers; Martin L Hibberd
Journal:  Nat Genet       Date:  2011-11-13       Impact factor: 38.330

2.  A genome-wide association study identifies three new risk loci for Kawasaki disease.

Authors:  Yoshihiro Onouchi; Kouichi Ozaki; Jane C Burns; Chisato Shimizu; Masaru Terai; Hiromichi Hamada; Takafumi Honda; Hiroyuki Suzuki; Tomohiro Suenaga; Takashi Takeuchi; Norishige Yoshikawa; Yoichi Suzuki; Kumi Yasukawa; Ryota Ebata; Kouji Higashi; Tsutomu Saji; Yasushi Kemmotsu; Shinichi Takatsuki; Kazunobu Ouchi; Fumio Kishi; Tetsushi Yoshikawa; Toshiro Nagai; Kunihiro Hamamoto; Yoshitake Sato; Akihito Honda; Hironobu Kobayashi; Junichi Sato; Shoichi Shibuta; Masakazu Miyawaki; Ko Oishi; Hironobu Yamaga; Noriyuki Aoyagi; Seiji Iwahashi; Ritsuko Miyashita; Yuji Murata; Kumiko Sasago; Atsushi Takahashi; Naoyuki Kamatani; Michiaki Kubo; Tatsuhiko Tsunoda; Akira Hata; Yusuke Nakamura; Toshihiro Tanaka
Journal:  Nat Genet       Date:  2012-03-25       Impact factor: 38.330

3.  Lessons from Kawasaki disease: all brands of IVIG are not equal.

Authors:  E Richard Stiehm
Journal:  J Pediatr       Date:  2006-01       Impact factor: 4.406

4.  [Effects of intravenous immunoglobulin upon the overexpression and over-activation of nuclear factor-κB and matrix metalloproteinase-9 in murine model of Kawasaki disease].

Authors:  Wen Shangguan; Zhongdong Du; Haiming Yang; Yanlan Zhang; Mingjing Song; Wei Dong
Journal:  Zhonghua Yi Xue Za Zhi       Date:  2014-04-01

5.  Applying machine learning to gait analysis data for disease identification.

Authors:  Ranveer Joyseeree; Rami Abou Sabha; Henning Mueller
Journal:  Stud Health Technol Inform       Date:  2015

6.  Molecular and immunological biomarkers to predict IVIg response.

Authors:  Caroline Galeotti; Srini V Kaveri; Jagadeesh Bayry
Journal:  Trends Mol Med       Date:  2015-02-10       Impact factor: 11.951

7.  Analysis of the high affinity IgE receptor genes reveals epistatic effects of FCER1A variants on eczema risk.

Authors:  J M Mahachie John; H Baurecht; E Rodríguez; A Naumann; S Wagenpfeil; N Klopp; M Mempel; N Novak; T Bieber; H-E Wichmann; J Ring; T Illig; T Cattaert; K Van Steen; S Weidinger
Journal:  Allergy       Date:  2009-12-21       Impact factor: 13.146

8.  Predicting IVIG resistance in UK Kawasaki disease.

Authors:  Sarah Davies; Natalina Sutton; Sarah Blackstock; Stuart Gormley; Clive J Hoggart; Michael Levin; Jethro A Herberg
Journal:  Arch Dis Child       Date:  2015-02-10       Impact factor: 3.791

9.  Hyaluronan inhibits osteoclast differentiation via Toll-like receptor 4.

Authors:  Eun-Ju Chang; Hyon Jong Kim; Jeongim Ha; Hyung Joon Kim; Jiyoon Ryu; Kwang-Hyun Park; Uh-Hyun Kim; Zang Hee Lee; Hyun-Man Kim; David E Fisher; Hong-Hee Kim
Journal:  J Cell Sci       Date:  2006-12-12       Impact factor: 5.285

Review 10.  [Coronary arteritis of Kawasaki disease unresponsive to high-dose intravenous gammaglobulin successfully treated with plasmapheresis].

Authors:  M Mori; N Tomono; S Yokota
Journal:  Nihon Rinsho Meneki Gakkai Kaishi       Date:  1995-06
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