Literature DB >> 27151851

PROTEIN DESIGN. Inspired by nature.

Ravit Netzer1, Sarel J Fleishman2.   

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Year:  2016        PMID： 27151851      PMCID： PMC4888937          DOI： 10.1126/science.aaf7599

Source DB:  PubMed          Journal:  Science        ISSN： 0036-8075            Impact factor:   47.728


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  9 in total

1.  Design of a novel globular protein fold with atomic-level accuracy.

Authors:  Brian Kuhlman; Gautam Dantas; Gregory C Ireton; Gabriele Varani; Barry L Stoddard; David Baker
Journal:  Science       Date:  2003-11-21       Impact factor: 47.728

2.  Computational design of proteins targeting the conserved stem region of influenza hemagglutinin.

Authors:  Sarel J Fleishman; Timothy A Whitehead; Damian C Ekiert; Cyrille Dreyfus; Jacob E Corn; Eva-Maria Strauch; Ian A Wilson; David Baker
Journal:  Science       Date:  2011-05-13       Impact factor: 47.728

3.  Design of structurally distinct proteins using strategies inspired by evolution.

Authors:  T M Jacobs; B Williams; T Williams; X Xu; A Eletsky; J F Federizon; T Szyperski; B Kuhlman
Journal:  Science       Date:  2016-05-06       Impact factor: 47.728

4.  High thermodynamic stability of parametrically designed helical bundles.

Authors:  Po-Ssu Huang; Gustav Oberdorfer; Chunfu Xu; David Baker; Xue Y Pei; Brent L Nannenga; Joseph M Rogers; Frank DiMaio; Tamir Gonen; Ben Luisi
Journal:  Science       Date:  2014-10-24       Impact factor: 47.728

5.  De novo design of protein homo-oligomers with modular hydrogen-bond network-mediated specificity.

Authors:  Scott E Boyken; Zibo Chen; Benjamin Groves; Robert A Langan; Gustav Oberdorfer; Alex Ford; Jason M Gilmore; Chunfu Xu; Frank DiMaio; Jose Henrique Pereira; Banumathi Sankaran; Georg Seelig; Peter H Zwart; David Baker
Journal:  Science       Date:  2016-05-06       Impact factor: 47.728

Review 6.  Why reinvent the wheel? Building new proteins based on ready-made parts.

Authors:  Olga Khersonsky; Sarel J Fleishman
Journal:  Protein Sci       Date:  2016-02-22       Impact factor: 6.725

7.  Principles for designing ideal protein structures.

Authors:  Nobuyasu Koga; Rie Tatsumi-Koga; Gaohua Liu; Rong Xiao; Thomas B Acton; Gaetano T Montelione; David Baker
Journal:  Nature       Date:  2012-11-08       Impact factor: 49.962

8.  Exploring the repeat protein universe through computational protein design.

Authors:  T J Brunette; Fabio Parmeggiani; Po-Ssu Huang; Gira Bhabha; Damian C Ekiert; Susan E Tsutakawa; Greg L Hura; John A Tainer; David Baker
Journal:  Nature       Date:  2015-12-16       Impact factor: 49.962

9.  Rational design of α-helical tandem repeat proteins with closed architectures.

Authors:  Lindsey Doyle; Jazmine Hallinan; Jill Bolduc; Fabio Parmeggiani; David Baker; Barry L Stoddard; Philip Bradley
Journal:  Nature       Date:  2015-12-16       Impact factor: 49.962
  9 in total
  5 in total

1.  Ultrahigh specificity in a network of computationally designed protein-interaction pairs.

Authors:  Ravit Netzer; Dina Listov; Rosalie Lipsh; Orly Dym; Shira Albeck; Orli Knop; Colin Kleanthous; Sarel J Fleishman
Journal:  Nat Commun       Date:  2018-12-11       Impact factor: 14.919

2.  Optimizing antibody affinity and stability by the automated design of the variable light-heavy chain interfaces.

Authors:  Shira Warszawski; Aliza Borenstein Katz; Rosalie Lipsh; Lev Khmelnitsky; Gili Ben Nissan; Gabriel Javitt; Orly Dym; Tamar Unger; Orli Knop; Shira Albeck; Ron Diskin; Deborah Fass; Michal Sharon; Sarel J Fleishman
Journal:  PLoS Comput Biol       Date:  2019-08-23       Impact factor: 4.475

Review 3.  Harnessing self-assembled peptide nanoparticles in epitope vaccine design.

Authors:  Manica Negahdaripour; Nasim Golkar; Nasim Hajighahramani; Sedigheh Kianpour; Navid Nezafat; Younes Ghasemi
Journal:  Biotechnol Adv       Date:  2017-05-15       Impact factor: 14.227

4.  Principles for computational design of binding antibodies.

Authors:  Dror Baran; M Gabriele Pszolla; Gideon D Lapidoth; Christoffer Norn; Orly Dym; Tamar Unger; Shira Albeck; Michael D Tyka; Sarel J Fleishman
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-25       Impact factor: 11.205

5.  Lymphatic vessel density is associated with CD8+ T cell infiltration and immunosuppressive factors in human melanoma.

Authors:  Natacha Bordry; Maria A S Broggi; Kaat de Jonge; Karin Schaeuble; Philippe O Gannon; Periklis G Foukas; Esther Danenberg; Emanuela Romano; Petra Baumgaertner; Manuel Fankhauser; Noémie Wald; Laurène Cagnon; Samia Abed-Maillard; Hélène Maby-El Hajjami; Timothy Murray; Kalliopi Ioannidou; Igor Letovanec; Pu Yan; Olivier Michielin; Maurice Matter; Melody A Swartz; Daniel E Speiser
Journal:  Oncoimmunology       Date:  2018-05-31       Impact factor: 8.110
  5 in total

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