Literature DB >> 27149848

A Polymorphic Antioxidant Response Element Links NRF2/sMAF Binding to Enhanced MAPT Expression and Reduced Risk of Parkinsonian Disorders.

Xuting Wang1, Michelle R Campbell2, Sarah E Lacher3, Hye-Youn Cho4, Ma Wan2, Christopher L Crowl2, Brian N Chorley2, Gareth L Bond5, Steven R Kleeberger4, Matthew Slattery3, Douglas A Bell6.   

Abstract

The NRF2/sMAF protein complex regulates the oxidative stress response by occupying cis-acting enhancers containing an antioxidant response element (ARE). Integrating genome-wide maps of NRF2/sMAF occupancy with disease-susceptibility loci, we discovered eight polymorphic AREs linked to 14 highly ranked disease-risk SNPs in individuals of European ancestry. Among these SNPs was rs242561, located within a regulatory region of the MAPT gene (encoding microtubule-associated protein Tau). It was consistently occupied by NRF2/sMAF in multiple experiments and its strong-binding allele associated with higher mRNA levels in cell lines and human brain tissue. Induction of MAPT transcription by NRF2 was confirmed using a human neuroblastoma cell line and a Nrf2-deficient mouse model. Most importantly, rs242561 displayed complete linkage disequilibrium with a highly protective allele identified in multiple GWASs of progressive supranuclear palsy, Parkinson's disease, and corticobasal degeneration. These observations suggest a potential role for NRF2/sMAF in tauopathies and a possible role for NRF2 pathway activators in disease prevention.
Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Year:  2016        PMID: 27149848      PMCID: PMC5063658          DOI: 10.1016/j.celrep.2016.03.068

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  53 in total

1.  Mapping short DNA sequencing reads and calling variants using mapping quality scores.

Authors:  Heng Li; Jue Ruan; Richard Durbin
Journal:  Genome Res       Date:  2008-08-19       Impact factor: 9.043

Review 2.  Molecular basis for the contribution of the antioxidant responsive element to cancer chemoprevention.

Authors:  J D Hayes; M McMahon
Journal:  Cancer Lett       Date:  2001-12-28       Impact factor: 8.679

3.  Identification of polymorphic antioxidant response elements in the human genome.

Authors:  Xuting Wang; Daniel J Tomso; Brian N Chorley; Hye-Youn Cho; Vivian G Cheung; Steven R Kleeberger; Douglas A Bell
Journal:  Hum Mol Genet       Date:  2007-04-04       Impact factor: 6.150

Review 4.  Brief update on different roles of tau in neurodegeneration.

Authors:  Arne Ittner; Yazi D Ke; Janet van Eersel; Amadeus Gladbach; Jürgen Götz; Lars M Ittner
Journal:  IUBMB Life       Date:  2011-07       Impact factor: 3.885

5.  An Nrf2/small Maf heterodimer mediates the induction of phase II detoxifying enzyme genes through antioxidant response elements.

Authors:  K Itoh; T Chiba; S Takahashi; T Ishii; K Igarashi; Y Katoh; T Oyake; N Hayashi; K Satoh; I Hatayama; M Yamamoto; Y Nabeshima
Journal:  Biochem Biophys Res Commun       Date:  1997-07-18       Impact factor: 3.575

6.  Haplotype-specific expression of the N-terminal exons 2 and 3 at the human MAPT locus.

Authors:  Tara M Caffrey; Catharine Joachim; Richard Wade-Martins
Journal:  Neurobiol Aging       Date:  2007-06-28       Impact factor: 4.673

7.  Genetic variability in the regulation of gene expression in ten regions of the human brain.

Authors:  Adaikalavan Ramasamy; Daniah Trabzuni; Sebastian Guelfi; Vibin Varghese; Colin Smith; Robert Walker; Tisham De; Lachlan Coin; Rohan de Silva; Mark R Cookson; Andrew B Singleton; John Hardy; Mina Ryten; Michael E Weale
Journal:  Nat Neurosci       Date:  2014-08-31       Impact factor: 24.884

8.  Identification of novel NRF2-regulated genes by ChIP-Seq: influence on retinoid X receptor alpha.

Authors:  Brian N Chorley; Michelle R Campbell; Xuting Wang; Mehmet Karaca; Deepa Sambandan; Fatu Bangura; Peng Xue; Jingbo Pi; Steven R Kleeberger; Douglas A Bell
Journal:  Nucleic Acids Res       Date:  2012-05-11       Impact factor: 16.971

9.  Integrative analysis of 111 reference human epigenomes.

Authors:  Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi-Moussavi; Pouya Kheradpour; Zhizhuo Zhang; Jianrong Wang; Michael J Ziller; Viren Amin; John W Whitaker; Matthew D Schultz; Lucas D Ward; Abhishek Sarkar; Gerald Quon; Richard S Sandstrom; Matthew L Eaton; Yi-Chieh Wu; Andreas R Pfenning; Xinchen Wang; Melina Claussnitzer; Yaping Liu; Cristian Coarfa; R Alan Harris; Noam Shoresh; Charles B Epstein; Elizabeta Gjoneska; Danny Leung; Wei Xie; R David Hawkins; Ryan Lister; Chibo Hong; Philippe Gascard; Andrew J Mungall; Richard Moore; Eric Chuah; Angela Tam; Theresa K Canfield; R Scott Hansen; Rajinder Kaul; Peter J Sabo; Mukul S Bansal; Annaick Carles; Jesse R Dixon; Kai-How Farh; Soheil Feizi; Rosa Karlic; Ah-Ram Kim; Ashwinikumar Kulkarni; Daofeng Li; Rebecca Lowdon; GiNell Elliott; Tim R Mercer; Shane J Neph; Vitor Onuchic; Paz Polak; Nisha Rajagopal; Pradipta Ray; Richard C Sallari; Kyle T Siebenthall; Nicholas A Sinnott-Armstrong; Michael Stevens; Robert E Thurman; Jie Wu; Bo Zhang; Xin Zhou; Arthur E Beaudet; Laurie A Boyer; Philip L De Jager; Peggy J Farnham; Susan J Fisher; David Haussler; Steven J M Jones; Wei Li; Marco A Marra; Michael T McManus; Shamil Sunyaev; James A Thomson; Thea D Tlsty; Li-Huei Tsai; Wei Wang; Robert A Waterland; Michael Q Zhang; Lisa H Chadwick; Bradley E Bernstein; Joseph F Costello; Joseph R Ecker; Martin Hirst; Alexander Meissner; Aleksandar Milosavljevic; Bing Ren; John A Stamatoyannopoulos; Ting Wang; Manolis Kellis
Journal:  Nature       Date:  2015-02-19       Impact factor: 69.504

10.  Mapping cis- and trans-regulatory effects across multiple tissues in twins.

Authors:  Elin Grundberg; Kerrin S Small; Åsa K Hedman; Alexandra C Nica; Alfonso Buil; Sarah Keildson; Jordana T Bell; Tsun-Po Yang; Eshwar Meduri; Amy Barrett; James Nisbett; Magdalena Sekowska; Alicja Wilk; So-Youn Shin; Daniel Glass; Mary Travers; Josine L Min; Sue Ring; Karen Ho; Gudmar Thorleifsson; Augustine Kong; Unnur Thorsteindottir; Chrysanthi Ainali; Antigone S Dimas; Neelam Hassanali; Catherine Ingle; David Knowles; Maria Krestyaninova; Christopher E Lowe; Paola Di Meglio; Stephen B Montgomery; Leopold Parts; Simon Potter; Gabriela Surdulescu; Loukia Tsaprouni; Sophia Tsoka; Veronique Bataille; Richard Durbin; Frank O Nestle; Stephen O'Rahilly; Nicole Soranzo; Cecilia M Lindgren; Krina T Zondervan; Kourosh R Ahmadi; Eric E Schadt; Kari Stefansson; George Davey Smith; Mark I McCarthy; Panos Deloukas; Emmanouil T Dermitzakis; Tim D Spector
Journal:  Nat Genet       Date:  2012-09-02       Impact factor: 38.330

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  18 in total

1.  Axonal pathology in hPSC-based models of Parkinson's disease results from loss of Nrf2 transcriptional activity at the Map1b gene locus.

Authors:  Christopher Czaniecki; Tammy Ryan; Morgan G Stykel; Jennifer Drolet; Juliane Heide; Ryan Hallam; Shalandra Wood; Carla Coackley; Keith Sherriff; Craig D C Bailey; Scott D Ryan
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-24       Impact factor: 11.205

2.  NRF2/ARE pathway negatively regulates BACE1 expression and ameliorates cognitive deficits in mouse Alzheimer's models.

Authors:  Gahee Bahn; Jong-Sung Park; Ui Jeong Yun; Yoon Jee Lee; Yuri Choi; Jin Su Park; Seung Hyun Baek; Bo Youn Choi; Yoon Suk Cho; Hark Kyun Kim; Jihoon Han; Jae Hoon Sul; Sang-Ha Baik; Jinhwan Lim; Nobunao Wakabayashi; Soo Han Bae; Jeung-Whan Han; Thiruma V Arumugam; Mark P Mattson; Dong-Gyu Jo
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-04       Impact factor: 11.205

3.  Identification of Dominant Transcripts in Oxidative Stress Response by a Full-Length Transcriptome Analysis.

Authors:  Akihito Otsuki; Yasunobu Okamura; Yuichi Aoki; Noriko Ishida; Kazuki Kumada; Naoko Minegishi; Fumiki Katsuoka; Kengo Kinoshita; Masayuki Yamamoto
Journal:  Mol Cell Biol       Date:  2021-01-25       Impact factor: 4.272

Review 4.  Genomic resources for dissecting the role of non-protein coding variation in gene-environment interactions.

Authors:  Daniel Levings; Kirsten E Shaw; Sarah E Lacher
Journal:  Toxicology       Date:  2020-05-22       Impact factor: 4.221

Review 5.  Recent insights into the role of glia and oxidative stress in Alzheimer's disease gained from Drosophila.

Authors:  Lindsey D Goodman; Hugo J Bellen
Journal:  Curr Opin Neurobiol       Date:  2021-08-18       Impact factor: 6.627

Review 6.  Signal amplification in the KEAP1-NRF2-ARE antioxidant response pathway.

Authors:  Shengnan Liu; Jingbo Pi; Qiang Zhang
Journal:  Redox Biol       Date:  2022-06-30       Impact factor: 10.787

7.  Non-invasive and high-throughput interrogation of exon-specific isoform expression.

Authors:  Dong-Jiunn Jeffery Truong; Teeradon Phlairaharn; Bianca Eßwein; Christoph Gruber; Deniz Tümen; Enikő Baligács; Niklas Armbrust; Francesco Leandro Vaccaro; Eva-Maria Lederer; Eva Magdalena Beck; Julian Geilenkeuser; Simone Göppert; Luisa Krumwiede; Christian Grätz; Gerald Raffl; Dominic Schwarz; Martin Zirngibl; Milica Živanić; Maren Beyer; Johann Dietmar Körner; Tobias Santl; Valentin Evsyukov; Tabea Strauß; Sigrid C Schwarz; Günter U Höglinger; Peter Heutink; Sebastian Doll; Marcus Conrad; Florian Giesert; Wolfgang Wurst; Gil Gregor Westmeyer
Journal:  Nat Cell Biol       Date:  2021-06-03       Impact factor: 28.824

8.  Simvastatin as a Potential Disease-Modifying Therapy for Patients with Parkinson's Disease: Rationale for Clinical Trial, and Current Progress.

Authors:  Camille B Carroll; Richard K H Wyse
Journal:  J Parkinsons Dis       Date:  2017       Impact factor: 5.568

Review 9.  Tau Structures.

Authors:  Jesus Avila; Juan S Jiménez; Carmen L Sayas; Marta Bolós; Juan C Zabala; Germán Rivas; Felix Hernández
Journal:  Front Aging Neurosci       Date:  2016-11-08       Impact factor: 5.750

10.  Gene regulatory effects of disease-associated variation in the NRF2 network.

Authors:  Sarah E Lacher; Matthew Slattery
Journal:  Curr Opin Toxicol       Date:  2016-09-28
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