Literature DB >> 27149454

DNMT3A R882 Mutations Predict a Poor Prognosis in AML: A Meta-Analysis From 4474 Patients.

Xiao-Qing Yuan1, Li Peng, Wen-Jing Zeng, Bin-Yuan Jiang, Guan-Cheng Li, Xiao-Ping Chen.   

Abstract

DNA (cytosine-5)-methyltransferase 3 alpha (DNMT3A) mutations were widely believed to be independently associated with inferior prognosis in acute myeloid leukemia (AML) patients. As dominant missense alterations in DNMT3A mutations, R882 mutations cause the focal hypomethylation phenotype. However, there remains debate on the influence of R882 mutations on AML prognosis. Thus, this meta-analysis aimed at further illustrating the prognostic power of DNMT3A R882 mutations in AML patients.Eligible studies were identified from 5 databases containing PubMed, Embase, Web of Science, Clinical Trials, and the Cochrane Library (up to October 25, 2015). Effects (hazard ratios [HRs] with 95% confidence interval [CI]) of relapse-free survival (RFS) and overall survival (OS) were pooled to estimate the prognostic power of mutant DNMT3A R882 in overall patients and subgroups of AML patients.Eight competent studies with 4474 AML patients including 694 with DNMT3A R882 mutations were included. AML patients with DNMT3A R882 mutations showed significant shorter RFS (HR = 1.40, 95% CI = 1.24-1.59, P < 0.001) and OS (HR = 1.47, 95% CI = 1.17-1.86, P = 0.001) in the overall population. DNMT3A R882 mutations predicted worse RFS and OS among the subgroups of patients under age 60 (RFS: HR = 1.44, 95% CI = 1.25-1.66, P < 0.001; OS: HR = 1.48, 95% CI = 1.15-1.90, P = 0.002), over age 60 (RFS: HR = 2.03, 95% CI = 1.40-2.93, P < 0.001; OS: HR = 1.85, 95% CI = 1.36-2.53, P < 0.001), cytogenetically normal (CN)-AML (RFS: HR = 1.52, 95% CI = 1.26-1.83, P < 0.001; OS: HR = 1.67, 95% CI = 1.16-2.41, P = 0.006), and non-CN-AML (RFS: HR = 1.96, 95% CI = 1.20-3.21, P = 0.006; OS: HR = 2.51, 95% CI = 1.52-4.15, P = 0.0038).DNMT3A R882 mutations possessed significant unfavorable prognostic influence on RFS and OS in AML patients.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27149454      PMCID: PMC4863771          DOI: 10.1097/MD.0000000000003519

Source DB:  PubMed          Journal:  Medicine (Baltimore)        ISSN: 0025-7974            Impact factor:   1.889


INTRODUCTION

Acute myeloid leukemia (AML) is a clinical and biological heterogeneous clonal stem cell disorder characterized by clonal and aggressive expansion of myeloid progenitor cells or “blast” cells in bone marrow.[1,2] AML usually presents with a broad spectrum of prognosis-related cytogenetic abnormities, genetic mutations, and aberrant expression of genes.[3,4] Currently, AML is healed in 35% to 40% among younger patients with age <60, and 5% to 15% among older patients with age ≥60.[5] The huge molecular heterogeneity of AML has become growingly distinct over the past 15 years, despite the cytogenetic heterogeneity of the disease has been realized for over 30 years.[5] The prognostic significance of this biological heterogeneity is well-accepted, but there remains a need to identify better and more precise predictors of disease outcome. Recently, genetic mutations and epigenetic alterations have been identified in the bone-marrow leukemogenesis and are reported to be associated with AML outcomes.[6,7] Previous studies have suggested that internal tandem duplication in fms-related tyrosine kinase 3 (FLT3-ITD), mutations in nucleophosmin (NPM1), and CCAAT/enhancer binding protein alpha (CEBPA) can be used to stratify risk among patients with normal karyotype.[8] Later reports have identified novel prognosis-related mutations in AML patients, which include mutational isocitrate dehydrogenase 2 (IDH2), additional sex combs like 1 (ASXL1), and DNA (cytosine-5)-methyltransferase 3 alpha (DNMT3A).[9] DNMT3A is responsible for de novo methylation of genome DNA during mammalian development, and DNMT3A alterations are thought to play important roles in etiology of various diseases including AML.[10]DNMT3A is one of the most frequently mutated genes in AML patients, being found mutated in approximately 20% of the patients.[11,12]DNMT3A somatic mutation was first identified by whole-genome sequencing in an AML patient with normal karyotype,[13] which was associated with worse clinical outcomes.[14,15] Overall, mountains of studies have declared that DNMT3A could be a prognostic indicator in AML patients. With the announcement of the Precision Medicine Initiative in USA, it is urgent to find out the function of more and finer biomarkers, thus to generate knowledge applicable to the whole range of health and disease.[16,17] And AML is no exception. In AML patients with DNMT3A mutations, about 60% patients exhibit heterozygous mutations at Arginine 882 (R882), which results in loss-of-function effect and disruption of normal methylation function.[18-20] Four R882 mutations included R882C (arginine → cysteine), R882H (arginine → histidine), R882S (arginine → serine), and R882P (arginine → phenylalanine) are reported.[14,21] Therefore, DNMT3A mutations are usually classified as R882 mutations and non-R882 mutations.[22] However, there existed an inconsistent opinion on whether DNMT3A R882 mutations have the potential to predict AML prognosis. For example, Renneville and colleagues reported that patients with R882 mutations showed shorter RFS and OS in cytogenetically normal (CN)-AML,[23] while some studies showed negative findings on OS time.[24,25] So, this meta-analysis was aimed at systematically elaborating the prognostic values of DNMT3A R882 mutations in AML patients, in order to guide precisely clinical decision-making even to improve the prognosis of the patients.

MATERIALS AND METHODS

Literature Search

Literature search was conducted in PubMed, Embase, Web of Science, ClinicalTrials, and the Cochrane Library with the following search terms: “AML,” “acute myeloid leukemia,” “Leukemia, Myeloid, Acute,” “acute myelogenous leukemia,” “acute myelocytic leukemia,” AND “DNMT3A,” “DNA methyltransferase 3 alpha,” “DNA methyltransferase 3A,” “DNA (cytosine-5-)-methyltransferase 3 alpha,” “DNA (cytosine-5)-methyltransferase 3A,” AND “R882,” “Arginine 882,” “Arg-882,” “Arg 882,” “882.”

Study Selection

No related review protocol has been existed or registered. Studies were included when they fulfilled all criteria as follows. Published in English before October 25, 2015; original articles as cohort studies; focused on prognostic effect of DNMT3A containing R882 mutations on AML patients; offered data on overall survival (OS) and/or relapse-free survival (RFS). Exclusion criteria: pediatric AML; meta-analysis, letters, comments, case reports and reviews; duplicate publications. And repetitive literature was managed and removed by Endnote X4.

Data Extraction and Quality Assessment

Two researchers independently went over all the articles that were satisfied with the inclusion criteria, and the discrepancies between reviewers were resolved via discussion. Information including first author, year of publication, study region, sample size, sex distribution, median age, the French-American-British (FAB) subtype and cytogenetic features from each eligible study was extracted. Furthermore, the corresponding hazard ratios (HRs) with 95% confidence interval (95% CI) for RFS and OS were calculated from COX multivariable models, or from analysis of original data in supplemental information via COX models, or from corresponding Kaplan–Meier (K-M) curves by the methods.[26,27] The methodological quality of included literatures was evaluated through the Newcastle-Ottawa-Scale (NOS).[28] The NOS consisted of 3 dimensions (selection, comparability, and exposure or outcome), which assigned, respectively, 4, 2, and 3 points for the 3 dimensions with a total maximum of 9 scores. On the basis of the NOS, the quality of these studies was classified into 3 types: high qualities (7–9 scores), intermediate qualities (4–6 scores), and low qualities (1–3 scores).[28,29]

Statistical Analysis

Meta-analysis was carried out with the software of Review Manager (RevMan) (version 5.3.5; the Nordic Cochrane Centre, Copenhagen, Denmark), while meta-regression analysis was performed with STATA software (version 12.0; College Station, TX). Prognostic role of DNMT3A R882 mutations on RFS and OS were assessed by estimation of the pooled HRs and their respective 95% CI with the inverse variance method in total population and subgroups. Statistical heterogeneity was assessed by using the Chi-squared test (the significance of heterogeneity was artificially expressed as P′-value to distinguish from the significance of outcomes) and I2 statistics. When there was no significant heterogeneity (P-value > 0.1 and I2 < 50%), the pooled HRs were assessed by fixed-effect model. Otherwise, random-effect model was applied to enhance the stability of the meta-analysis. Subgroup analysis and meta-regression analysis were implemented to probe the potential sources of heterogeneity. Sensitivity analysis was conducted to test the robustness of incorporative HRs for RFS and OS of AML patients. Publication bias was evaluated by Begg funnel plot and Egger test. This study was written following the PRISMA guidelines. As a meta-analysis study, ethical approval of this study is not required.

RESULTS

Search Results

A total of 50 publications were identified by the systematic literature search, of which 1 review was excluded and 13 duplicates were removed, resulting in 36 publications. Also, 28 articles were removed in view of relevance, design, and suitable outcome data through the title, abstract, and full-text screening regarding the aforementioned inclusion criteria (Figure 1). Ultimately, 8 publications were included in the meta-analysis.
FIGURE 1

Flow chart of the procedure for the literature search.

Flow chart of the procedure for the literature search.

Characteristics and Bias Risk of the Included Studies

Eight studies containing a total of 4474 subjects (694 with DNMT3A R882 mutations) were included in the meta-analysis. The principal features of these subjects with or without DNMT3A R882 mutations are displayed in Tables 1 and 2, respectively, and the accessional characteristics are shown in Tables S1 and S2, respectively. Meanwhile, sample size of the studies ranged from 67 to 1770 patients. Of these studies, 5 studies originated from Europe, 1 from Asia, and 2 from USA. The frequency of DNMT3A R882 mutations ranged from 7.46% to 24.39%.
TABLE 1

Clinical and Laboratory Characteristics of AML Patients With DNMT3A R882 Mutations From the 8 Included Studies

TABLE 2

Clinical and Laboratory Characteristics of AML Patients Without DNMT3A R882 Mutations From the 8 Included Studies

Clinical and Laboratory Characteristics of AML Patients With DNMT3A R882 Mutations From the 8 Included Studies Clinical and Laboratory Characteristics of AML Patients Without DNMT3A R882 Mutations From the 8 Included Studies Risk of bias (see quality assessment in the part of methods) was evaluated based on 9 assessment items of NOS. The qualities of 7 studies (87.5%) were regarded as high, and the rest 1 study (12.5%) was treated as moderate. Relevant details are presented in Table 3.
TABLE 3

Quality Assessment of 8 Included Studies

Quality Assessment of 8 Included Studies

Prognostic Power of DNMT3A R882 Mutations in Total Population

RFS Data were extracted from 6 studies, totaling 3915 AML patients, containing 631 patients with DNMT3A R882 mutations and 3284 without R882 mutations. As presented in Figure 2, results showed no distinct heterogeneity (P′ = 0.21, I2 = 30 %). With a fixed-effect model, a significant shorter RFS was observed in AML patients with DNMT3A R882 mutations compared with those without R882 mutations in total population (HR = 1.40, 95% CI = 1.24–1.59, P < 0.001).
FIGURE 2

Forest plots of the HRs with 95% CI for RFS in overall AML patients. The size of the blocks or diamonds represents the weight for the fixed-effect model in the meta-analysis. HR >1 indicates that the presence of DNMT3A R882 mutations is associated with a shorter relapse-free survival (RFS).

OS Data were derived from 8 studies, totaling 4474 AML patients, containing 694 patients with DNMT3A R882 mutations and 3780 without R882 mutations. With a random-effect model, AML patients with the DNMT3A R882 mutations presented an evident shorter OS time than those without R882 mutations in total population (HR = 1.47, 95% CI = 1.17–1.86, P = 0.001, Figure 3). These results suggested that DNMT3A R882 mutations could predict inferior clinical outcomes in AML patients.
FIGURE 3

Forest plots of the HRs with 95% CI for OS in overall AML patients. The size of the blocks or diamonds represents the weight for the random-effect model in the meta-analysis. HR >1 indicates that the presence of DNMT3A R882 mutations is associated with a shorter overall survival (OS).

Forest plots of the HRs with 95% CI for RFS in overall AML patients. The size of the blocks or diamonds represents the weight for the fixed-effect model in the meta-analysis. HR >1 indicates that the presence of DNMT3A R882 mutations is associated with a shorter relapse-free survival (RFS). Forest plots of the HRs with 95% CI for OS in overall AML patients. The size of the blocks or diamonds represents the weight for the random-effect model in the meta-analysis. HR >1 indicates that the presence of DNMT3A R882 mutations is associated with a shorter overall survival (OS).

Prognostic Power of DNMT3A R882 Mutations in Different Subgroups

Prognostic Power of DNMT3A R882 Mutations Stratified by Age (<60 and ≥60)

Age is the most important factor influencing the prognosis of AML, and adults with age older than 60 have a shorter OS than adults with age younger than 60.[30,31] Meanwhile, based on the NCCN Clinical Practice Guidelines in Acute myeloid leukemia (available free of charge on the NCCN web site: http://www.nccn.org/ and in the NCCN Guidelines for Acute Myeloid Leukemia), we divided AML patients into different subgroups containing different age (<60 and ≥60) to further validate the prognostic ability of DNMT3A R882 mutations. The incorporative results of HRs for RFS and OS among AML patients of different age (<60 and ≥60) were presented in fixed- and random-effect model, respectively (Tables 4 and 5). Also, the matching forest plots are shown in Figures S1 and S2. With a fixed-effect model, significant shorter RFS or/and OS were observed in AML patients with the DNMT3A R882 mutations in comparison with those without R882 mutations in both subgroups of age < 60 (RFS: HR = 1.44, 95% CI = 1.25–1.66, P < 0.001) and age ≥60 (RFS: HR = 2.03, 95% CI = 1.40–2.93, P < 0.001; OS: HR = 1.85, 95% CI = 1.36–2.53, P < 0.001). With a random-effect model, significant shorter OS was observed in AML patients with the DNMT3A R882 mutations in comparison with those without R882 mutations in subgroup of age < 60 (OS: HR = 1.48, 95% CI = 1.15–1.90, P = 0.002). Meanwhile, similar results were also observed in the other model. This suggested that the DNMT3A R882 mutations could predict shorter RFS and OS in AML patients regardless of patient age.
TABLE 4

Outcomes of Subgroups Analysis in Fixed-Effect Models

TABLE 5

Outcomes of Subgroup Analysis in Random-Effect Models

Outcomes of Subgroups Analysis in Fixed-Effect Models Outcomes of Subgroup Analysis in Random-Effect Models

Prognostic Power of DNMT3A R882 Mutations in the Population of CN-AML and Non-CN-AML

Cytogenetic influenced dramatically the clinical outcome of AML patients, so subgroup analysis was also carried out in CN-AML and non-CN-AML patients, respectively. Tables 4 and 5 show the pooled results of HRs for RFS and OS among AML patients in subgroups of CN-AML and non-CN-AML in fixed- and random-effect model, respectively. Also, the matching forest plots in subgroups of CN-AML are presented in Figure S3. With a fixed-effect model, a significant shorter RFS was observed in AML patients with the DNMT3A R882 mutations compared with those without R882 mutations in subgroup of CN-AML (HR = 1.52, 95% CI = 1.26–1.83, P < 0.001). With a random-effect model, a significant shorter OS was observed in AML patients with the DNMT3A R882 mutations compared with those without R882 mutations in subgroup of CN-AML (HR = 1.67, 95% CI = 1.16–2.41, P = 0.006). Similarly, the consistent results were seen in the other effect model. RFS and OS in non-CN-AML patients were analyzed by using the original data of Ley study. As presented in Figure 4, remarkable shorter RFS and OS was shown in AML patients with the DNMT3A R882 mutations than those without R882 mutations in the non-CN-AML patients (RFS: HR = 1.96, 95% CI = 1.20–3.21, P = 0.006; OS: HR = 2.51, 95% CI = 1.52–4.15, P = 0.0038). In brief, DNMT3A R882 mutations may act as a poor prognostic indicator in both CN-AML and non-CN-AML patients.
FIGURE 4

Kaplan–Meier estimates of RFS and OS in the non-CN-AML patients. The relapse-free survival [RFS] (A) and overall survival [OS] (B) of DNMT3A R882 mutations were shown in noncytogenetically normal (CN)-AML patients, including 25 with DNMT3A R882 mutations and 205 without R882 mutations (n = 230). The median survival of RFS: DNMT3A R882 mutations vs without R882 mutations = 8.8 vs 24.2, P = 0.006; and the median survival of OS: DNMT3A R882 mutations vs without R882 mutations = 12.3 vs 32.5, P = 0.0038.

Kaplan–Meier estimates of RFS and OS in the non-CN-AML patients. The relapse-free survival [RFS] (A) and overall survival [OS] (B) of DNMT3A R882 mutations were shown in noncytogenetically normal (CN)-AML patients, including 25 with DNMT3A R882 mutations and 205 without R882 mutations (n = 230). The median survival of RFS: DNMT3A R882 mutations vs without R882 mutations = 8.8 vs 24.2, P = 0.006; and the median survival of OS: DNMT3A R882 mutations vs without R882 mutations = 12.3 vs 32.5, P = 0.0038.

Comparison of Prognostic Power Between DNMT3A R882 Mutations and Non-R882 Mutations

RFS Data were derived from 3 researches summing up 465 AML patients with DNMT3A mutations, including 306 DNMT3A R882 mutations and 159 DNMT3A non-R882 mutations. As shown in Figure 5, the results showed no visible heterogeneity (P′ = 0.47, I2 = 0%). With a fixed-effect model, there was no obvious difference in RFS time between the group of DNMT3A R882 mutations and non-R882 mutations (HR = 1.23, 95% CI = 1.00–1.52, P = 0.05).
FIGURE 5

Forest plots of the HRs with 95% CI for RFS in AML patients with DNMT3A mutations. The size of the blocks or diamonds represents the weight for the fixed-effect model in the meta-analysis. HR >1 indicates that the presence of DNMT3A R882 mutations is associated with a shorter relapse-free survival (RFS).

OS Data were extracted from 4 studies, totaling 954 AML patients with DNMT3A mutations, including 364 DNMT3A R882 mutations and 590 DNMT3A non-R882 mutations. With a random-effect model, there was no distinct difference in OS time between the group of DNMT3A R882 mutations and non-R882 mutations (Figure 6; HR = 0.95, 95% CI = 0.59–1.54, P = 0.84). These results suggested that DNMT3A R882 mutations may not differentiate the prognosis of AML patients at least on OS with other DNMT3A mutations.
FIGURE 6

Forest plots of the HRs with 95% CI for overall survival in AML patients with DNMT3A mutations. The size of the blocks or diamonds represents the weight for the random-effect model in meta-analysis.

Forest plots of the HRs with 95% CI for RFS in AML patients with DNMT3A mutations. The size of the blocks or diamonds represents the weight for the fixed-effect model in the meta-analysis. HR >1 indicates that the presence of DNMT3A R882 mutations is associated with a shorter relapse-free survival (RFS). Forest plots of the HRs with 95% CI for overall survival in AML patients with DNMT3A mutations. The size of the blocks or diamonds represents the weight for the random-effect model in meta-analysis.

Meta-Regression, Publication Bias, and Sensitive Analysis

Meta-regression analysis was analyzed by using the software Stata 12.0. Fixed-effect meta-regression analysis was applied in RFS study due to its relatively low heterogeneity (P′ = 0.21 > 0.1 and I2 = 30% < 50%), while random-effect model was applied in OS study. Fixed-effects meta-regression analysis showed that none of the following covariates affected the prognostic values of R882 mutations on RFS in AML patients (Table 6 and Figure S4): publication year (coefficient = −0.0939653, P = 0.835), region (coefficient = −0.1422338, P = 0.923), R/N (the ratio of patients’ number with DNMT3A R882 mutations to the all AML patients’ number, coefficient = 0.3002279, P = 0.986), sex (the ratio of males’ number to females’ number, coefficient = 0.3981209, P = 0.936), median age (coefficient = 0.0685541, P = 0.866), median follow-up time (months, coefficient = −0.0023704, P = 0.873), NOS (Newcastle-Ottawa-Scale for assessment of quality, coefficient = −0.1587112, P = 0.884), median percentage of BM blast (coefficient = −0.0224812, P = 0.926), and median WBC (coefficient = 0.0005318, P = 0.991). Furthermore, the random-effects meta-regression analysis showed that none of the following covariates affected the prognostic values of R882 mutations on OS in AML patients (Table 7 and Figure S5): publication year (coefficient = −0.080685, P = 0.834), region (coefficient = 0.0374755, P = 0.973), R/N (coefficient = −0.9386456, P = 0.941), sex (coefficient = 0.4083431, P = 0.927), median age (coefficient = 0.0652603, P = 0.771), median follow-up time (months, coefficient = −0.0026942, P = 0.827), NOS (coefficient = −0.219313, P = 0.759), median percentage of BM blast (coefficient = −0.0486064, P = 0.808), median WBC (coefficient = 0.008405, P = 0.848), and platelet count (coefficient = 0.0117103, P = 0.867).
TABLE 6

Fixed-Effects Meta-Regression Analysis for RFS Studies

TABLE 7

Random-Effects Meta-Regression Analysis for OS Studies

Fixed-Effects Meta-Regression Analysis for RFS Studies Random-Effects Meta-Regression Analysis for OS Studies Publication bias was analyzed by using RevMan 5.3.5 software. The funnel plot of RFS outcomes showed that the points were evenly distributed, and most of the points were within 95% CI. This may indicate no obvious publication bias in RFS analysis, and thus, the corresponding results of the study were credible. Although the shape of these funnel plot in OS studies did not amount to gross asymmetry except for the OS outcome in the population of age ≥60, these results merit consideration. In addition, the z-value of 4.54 or something like that and a corresponding 2-tailed P-value of <0.001 on OS between the group of DNMT3A R882 mutations and without R882 mutations in total patients is also worthy of our attention. The results of funnel plot are shown in Supplemental Materials (Figure S6). Furthermore, sensitivity tests were conducted during the process of the meta-analysis. Exclusion of any single study did not alter dramatically the over-all findings (Tables S3–S5).

DISCUSSION

DNA methylation is a key mechanism of epigenetic regulation in eukaryotes. As one of the enzymatically active mammalian DNA methyltransferases (DNMTs), DNMT3A can regulate gene expression and maintain cellular homeostasis by mediating the de novo methylation of DNA.[32] Recently, with the ever-accelerated development of cancer genome sequencing, DNMT3A was exposed as one of the most frequently mutated genes, raising questions concerning the prominent part of DNMT3A mutations in AML patients.[14,33] As dominant missense alterations in DNMT3A mutations, R882 mutations cause directly the focal hypomethylation phenotype.[20] In addition, DNMT3A R882 mutations are frequent in AML, but rare in other hematological diseases,[34] suggesting that DNMT3A R882 mutations own the potential to act as an independent prognostic marker in AML. This systematic meta-analysis showed that mutant DNMT3A R882 was associated with poor prognosis in AML patients. In this meta-analysis, 8 studies containing a total of 4474 AML patients were included, which included 694 AML patients with DNMT3A R882 mutations and 3780 AML patients without R882 mutations. And we found that AML patients with the DNMT3A R882 mutations presented significant shorter RFS and OS than those without R882 mutations in overall AML patients. Although there was a considerable but acceptable heterogeneity in those of OS study except for the population over age 60, the outcomes still deserve being considered. And various possible reasons contributed to the production of heterogeneity. First of all, the constituent ratio of patients’ age and cytogenetic abnormalities were diverse in each study. For example, 7 studies just or almost included patients under age 60,[14,15,23,24,35-37] and 4 studies merely included CN-AML patients.[23-25,35] Secondly, in consideration of less numbers of AML patients with R882 mutations in few included studies, we cannot further reckon the RFS and OS of AML patients when they were included. For example, only 5 AML patients with R882 mutations was appeared in K-M curves of RFS and OS in Park study, which can not accurately even not roughly calculate the values of HRs and 95% CI. They are likely to a source of heterogeneity. Thirdly, there was a lot of between-study heterogeneity on some other hands, such as the time of follow-up, region origin of patients among the 8 studies. At last, general information of individual patient just like Ley study did was not available for other studies, which also led to the heterogeneity of our analysis. AML is a clonal disorder of hemopoietic stem cells.[38] The survival of AML is influenced by factors such as age, cytogenetics, somatic mutations, etc.[39] Age is the most vital prognostic factor for AML patients, and adults with age older than 60 have a shorter OS in comparison with adults with age younger than 60.[30,31] Meanwhile, cytogenetic normality or abnormality influenced clinical outcome of AML dramatically.[40] For these reasons, we stratified AML patients into different subgroups including age (<60 and ≥60) and cytogenetics (CN-AML and non-CN-AML) to further validate the prognostic effect of mutant DNMT3A R882 in AML patients. Our findings showed shorter RFS and OS in AML patients with DNMT3A R882 mutations compared with those without R882 mutations in subgroups of age <60, age ≥60, CN-AML, and non-CN-AML, respectively. These results indicated that DNMT3A R882 mutations may act as a poor prognostic indicator in AML patients, which is independent of the age and cytogenetics. While, a relatively considerable heterogeneity remained in OS study, except for the subgroup of age ≥60. This may result from the small number of literatures included in the OS study of age ≥60 AML patients. Or else, it suggested that the DNMT3A R882 mutations may be particularly appropriate for predicting the clinical outcome OS in the AML population of age ≥60. Presently, there is still a controversy on prognostic effect of R882 mutations compared with DNMT3A non-R882 mutations (DNMT3A mutations affecting other codons). Ley et al[14] suggested no difference in the OS between the 2 groups. Meanwhile, Marcucci et al[35] reported that DNMT3A R882 mutations had no prognostic value in younger patients whereas were independently associated with worse outcome in older patients. Yet, Gaidzik et al's[24] findings showed unfavorable for DNMT3A R882 mutations on RFS while favorable for non-R882 mutations on OS in a cohort study. While in our meta-analysis, we observed no difference in either RFS or OS between AML patients with the DNMT3A R882 mutations and those with non-R882 mutations in patients positive for DNMT3A mutations. What merit our concern is that the P-value coincidently was 0.05, and this makes it essential do more studies with larger sample size to validate the OS significance of DNMT3A non-R882 mutations in AML patients. Our results were in lines with the studies of Ley and Marcucci, while were partly inconsistent with Gaidzik's study. The inconsistence was possibly due to the differences in biometrical analysis, such as selection bias and variances in model building. In Gaidzik's study, a potential selection bias may exist because of the high percentage of patients was selected for the analysis in relation to the whole study populations with 90%, while low percentage of patients was selected for the analysis in relation to the whole study populations with 6% in Marcucci study[35] and 18% in Ley study.[14] Anyway, DNMT3A R882 mutations could predict shorter RFS and OS in total AML population or in patients with DNMT3A mutations, especially for RFS. Three main limitations should be considered in our meta-analysis. First, there may be language bias, because the included studies were totally published in English. Second, selectional reporting was existed in some studies, such as the incorporated HRs for RFS were displayed in relative fewer studies than those for OS, and certain subgroups, like the older and non-CN-AML patients, were not analyzed in most of the studies, which leaded to the unavailability of useful information. Third, if aforementioned authors could offer complete patient data, like Ley, our paper would have been quite more flawless. In conclusion, our meta-analysis presented definitively an independent inferior prognostic effect of mutant DNMT3A R882 on the RFS and OS in AML patients. This was true also for AML patients in subgroups of age <60, age ≥60, CN-AML, and non-CN-AML. These results of meta-analysis may provide an insight for the prognostic prediction of AML patients, as well as infuse a drop into the ocean of precision prediction. Further studies with larger sample size and open individual data of patients are needed to validate the prognostic significance of mutant DNMT3A R882 in AML patients.
  39 in total

1.  The R882H DNMT3A mutation associated with AML dominantly inhibits wild-type DNMT3A by blocking its ability to form active tetramers.

Authors:  David A Russler-Germain; David H Spencer; Margaret A Young; Tamara L Lamprecht; Christopher A Miller; Robert Fulton; Matthew R Meyer; Petra Erdmann-Gilmore; R Reid Townsend; Richard K Wilson; Timothy J Ley
Journal:  Cancer Cell       Date:  2014-03-20       Impact factor: 31.743

Review 2.  DNMT3A in haematological malignancies.

Authors:  Liubin Yang; Rachel Rau; Margaret A Goodell
Journal:  Nat Rev Cancer       Date:  2015-02-19       Impact factor: 60.716

3.  DNMT3A mutations in acute myeloid leukemia.

Authors:  Timothy J Ley; Li Ding; Matthew J Walter; Michael D McLellan; Tamara Lamprecht; David E Larson; Cyriac Kandoth; Jacqueline E Payton; Jack Baty; John Welch; Christopher C Harris; Cheryl F Lichti; R Reid Townsend; Robert S Fulton; David J Dooling; Daniel C Koboldt; Heather Schmidt; Qunyuan Zhang; John R Osborne; Ling Lin; Michelle O'Laughlin; Joshua F McMichael; Kim D Delehaunty; Sean D McGrath; Lucinda A Fulton; Vincent J Magrini; Tammi L Vickery; Jasreet Hundal; Lisa L Cook; Joshua J Conyers; Gary W Swift; Jerry P Reed; Patricia A Alldredge; Todd Wylie; Jason Walker; Joelle Kalicki; Mark A Watson; Sharon Heath; William D Shannon; Nobish Varghese; Rakesh Nagarajan; Peter Westervelt; Michael H Tomasson; Daniel C Link; Timothy A Graubert; John F DiPersio; Elaine R Mardis; Richard K Wilson
Journal:  N Engl J Med       Date:  2010-11-10       Impact factor: 91.245

4.  Exome sequencing identifies somatic mutations of DNA methyltransferase gene DNMT3A in acute monocytic leukemia.

Authors:  Xiao-Jing Yan; Jie Xu; Zhao-Hui Gu; Chun-Ming Pan; Gang Lu; Yang Shen; Jing-Yi Shi; Yong-Mei Zhu; Lin Tang; Xiao-Wei Zhang; Wen-Xue Liang; Jian-Qing Mi; Huai-Dong Song; Ke-Qin Li; Zhu Chen; Sai-Juan Chen
Journal:  Nat Genet       Date:  2011-03-13       Impact factor: 38.330

Review 5.  Acute myeloid leukaemia in adults.

Authors:  Felicetto Ferrara; Charles A Schiffer
Journal:  Lancet       Date:  2013-02-09       Impact factor: 79.321

6.  A DNMT3A mutation common in AML exhibits dominant-negative effects in murine ES cells.

Authors:  Soo Jin Kim; Hongbo Zhao; Swanand Hardikar; Anup Kumar Singh; Margaret A Goodell; Taiping Chen
Journal:  Blood       Date:  2013-10-28       Impact factor: 22.113

7.  Clinical impact of DNMT3A mutations in younger adult patients with acute myeloid leukemia: results of the AML Study Group (AMLSG).

Authors:  Verena I Gaidzik; Richard F Schlenk; Peter Paschka; Anja Stölzle; Daniela Späth; Andrea Kuendgen; Marie von Lilienfeld-Toal; Wolfram Brugger; Hans Günter Derigs; Stephan Kremers; Richard Greil; Aruna Raghavachar; Mark Ringhoffer; Helmut R Salih; Mohammed Wattad; Heinz G Kirchen; Volker Runde; Gerhard Heil; Andreas L Petzer; Michael Girschikofsky; Michael Heuser; Sabine Kayser; Gudrun Goehring; Maria-Veronica Teleanu; Brigitte Schlegelberger; Arnold Ganser; Jürgen Krauter; Lars Bullinger; Hartmut Döhner; Konstanze Döhner
Journal:  Blood       Date:  2013-04-30       Impact factor: 22.113

8.  Pretreatment cytogenetic abnormalities are predictive of induction success, cumulative incidence of relapse, and overall survival in adult patients with de novo acute myeloid leukemia: results from Cancer and Leukemia Group B (CALGB 8461).

Authors:  John C Byrd; Krzysztof Mrózek; Richard K Dodge; Andrew J Carroll; Colin G Edwards; Diane C Arthur; Mark J Pettenati; Shivanand R Patil; Kathleen W Rao; Michael S Watson; Prasad R K Koduru; Joseph O Moore; Richard M Stone; Robert J Mayer; Eric J Feldman; Frederick R Davey; Charles A Schiffer; Richard A Larson; Clara D Bloomfield
Journal:  Blood       Date:  2002-08-01       Impact factor: 22.113

9.  Incidence and prognostic impact of DNMT3A mutations in Korean normal karyotype acute myeloid leukemia patients.

Authors:  Sang Hyuk Park; Jae-Cheol Choi; Shine Young Kim; Jongyoun Yi; Seung Hwan Oh; In-Suk Kim; Hyung-Hoi Kim; Chulhun Ludgerus Chang; Eun Yup Lee; Moo-Kon Song; Ho-Jin Shin; Joo Seop Chung
Journal:  Biomed Res Int       Date:  2015-01-11       Impact factor: 3.411

10.  Cooperating gene mutations in childhood acute myeloid leukemia with special reference on mutations of ASXL1, TET2, IDH1, IDH2, and DNMT3A.

Authors:  Der-Cherng Liang; Hsi-Che Liu; Chao-Ping Yang; Tang-Her Jaing; Iou-Jih Hung; Ting-Chi Yeh; Shih-Hsiang Chen; Jen-Yin Hou; Ying-Jung Huang; Yu-Shu Shih; Yu-Hui Huang; Tung-Huei Lin; Lee-Yung Shih
Journal:  Blood       Date:  2013-01-30       Impact factor: 25.476

View more
  21 in total

1.  FLT3-ITD with DNMT3A R882 double mutation is a poor prognostic factor in Chinese patients with acute myeloid leukemia after chemotherapy or allogeneic hematopoietic stem cell transplantation.

Authors:  Shanhao Tang; Hongjie Shen; Xinliang Mao; Haiping Dai; Xiaming Zhu; Shengli Xue; Zixuan Ding; Jing Lu; Depei Wu; Xiaowen Tang
Journal:  Int J Hematol       Date:  2017-06-14       Impact factor: 2.490

2.  Haploinsufficiency for DNA methyltransferase 3A predisposes hematopoietic cells to myeloid malignancies.

Authors:  Christopher B Cole; David A Russler-Germain; Shamika Ketkar; Angela M Verdoni; Amanda M Smith; Celia V Bangert; Nichole M Helton; Mindy Guo; Jeffery M Klco; Shelly O'Laughlin; Catrina Fronick; Robert Fulton; Gue Su Chang; Allegra A Petti; Christopher A Miller; Timothy J Ley
Journal:  J Clin Invest       Date:  2017-09-05       Impact factor: 14.808

Review 3.  Clonal hematopoiesis: Mutation-specific adaptation to environmental change.

Authors:  Marcus A Florez; Brandon T Tran; Trisha K Wathan; James DeGregori; Eric M Pietras; Katherine Y King
Journal:  Cell Stem Cell       Date:  2022-06-02       Impact factor: 25.269

4.  NPM1 mutated AML can relapse with wild-type NPM1: persistent clonal hematopoiesis can drive relapse.

Authors:  Alexander Höllein; Manja Meggendorfer; Frank Dicker; Sabine Jeromin; Niroshan Nadarajah; Wolfgang Kern; Claudia Haferlach; Torsten Haferlach
Journal:  Blood Adv       Date:  2018-11-27

5.  The R882H DNMT3A hot spot mutation stabilizes the formation of large DNMT3A oligomers with low DNA methyltransferase activity.

Authors:  Tuong-Vi Nguyen; Shihua Yao; Yahong Wang; Alan Rolfe; Anand Selvaraj; Rachel Darman; Jiyuan Ke; Markus Warmuth; Peter G Smith; Nicholas A Larsen; Lihua Yu; Ping Zhu; Peter Fekkes; Frédéric H Vaillancourt; David M Bolduc
Journal:  J Biol Chem       Date:  2019-10-03       Impact factor: 5.157

6.  High TGF-β1 expression predicts poor disease prognosis in hepatocellular carcinoma patients.

Authors:  Li Peng; Xiao-Qing Yuan; Chao-Yang Zhang; Fei Ye; Hui-Fang Zhou; Wen-Ling Li; Zhao-Yang Liu; Ya-Qin Zhang; Xi Pan; Guan-Cheng Li
Journal:  Oncotarget       Date:  2017-05-23

7.  Molecular basis of targeted therapy in T/NK-cell lymphoma/leukemia: A comprehensive genomic and immunohistochemical analysis of a panel of 33 cell lines.

Authors:  Rufino Mondejar; Cristina Pérez; Arantza Onaindia; Nerea Martinez; Julia González-Rincón; Helena Pisonero; Jose Pedro Vaqué; Laura Cereceda; Miguel Santibañez; Margarita Sánchez-Beato; Miguel Angel Piris
Journal:  PLoS One       Date:  2017-05-15       Impact factor: 3.240

8.  Association of a cytarabine chemosensitivity related gene expression signature with survival in cytogenetically normal acute myeloid leukemia.

Authors:  Han Yan; Lu Wen; Dan Tan; Pan Xie; Feng-Mei Pang; Hong-Hao Zhou; Wei Zhang; Zhao-Qian Liu; Jie Tang; Xi Li; Xiao-Ping Chen
Journal:  Oncotarget       Date:  2017-01-03

9.  High lncRNA H19 expression as prognostic indicator: data mining in female cancers and polling analysis in non-female cancers.

Authors:  Li Peng; Xiao-Qing Yuan; Zhao-Yang Liu; Wen-Ling Li; Chao-Yang Zhang; Ya-Qin Zhang; Xi Pan; Jun Chen; Yue-Hui Li; Guan-Cheng Li
Journal:  Oncotarget       Date:  2017-01-03

10.  Evaluation of DNMT3A genetic polymorphisms as outcome predictors in AML patients.

Authors:  Xiao-Qing Yuan; Dao-Yu Zhang; Han Yan; Yong-Long Yang; Ke-Wei Zhu; Yan-Hong Chen; Xi Li; Ji-Ye Yin; Xiao-Lin Li; Hui Zeng; Xiao-Ping Chen
Journal:  Oncotarget       Date:  2016-09-13
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.