Literature DB >> 27146662

Uncertainty quantification in flux balance analysis of spatially lumped and distributed models of neuron-astrocyte metabolism.

Daniela Calvetti1, Yougan Cheng2, Erkki Somersalo3.   

Abstract

Identifying feasible steady state solutions of a brain energy metabolism model is an inverse problem that allows infinitely many solutions. The characterization of the non-uniqueness, or the uncertainty quantification of the flux balance analysis, is tantamount to identifying the degrees of freedom of the solution. The degrees of freedom of multi-compartment mathematical models for energy metabolism of a neuron-astrocyte complex may offer a key to understand the different ways in which the energetic needs of the brain are met. In this paper we study the uncertainty in the solution, using techniques of linear algebra to identify the degrees of freedom in a lumped model, and Markov chain Monte Carlo methods in its extension to a spatially distributed case. The interpretation of the degrees of freedom in metabolic terms, more specifically, glucose and oxygen partitioning, is then leveraged to derive constraints on the free parameters to guarantee that the model is energetically feasible. We demonstrate how the model can be used to estimate the stoichiometric energy needs of the cells as well as the household energy based on the measured oxidative cerebral metabolic rate of glucose and glutamate cycling. Moreover, our analysis shows that in the lumped model the net direction of lactate dehydrogenase (LDH) in the cells can be deduced from the glucose partitioning between the compartments. The extension of the lumped model to a spatially distributed multi-compartment setting that includes diffusion fluxes from capillary to tissue increases the number of degrees of freedom, requiring the use of statistical sampling techniques. The analysis of the distributed model reveals that some of the conclusions valid for the spatially lumped model, e.g., concerning the LDH activity and glucose partitioning, may no longer hold.

Entities:  

Keywords:  Bayesian flux balance analysis; Brain energy metabolism; Distributed model; Glucose partitioning; Lactate shuttle

Mesh:

Substances:

Year:  2016        PMID: 27146662     DOI: 10.1007/s00285-016-1011-7

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  34 in total

Review 1.  Oxidative and nonoxidative metabolism of excited neurons and astrocytes.

Authors:  Albert Gjedde; Sean Marrett; Manouchehr Vafaee
Journal:  J Cereb Blood Flow Metab       Date:  2002-01       Impact factor: 6.200

2.  A model of the coupling between brain electrical activity, metabolism, and hemodynamics: application to the interpretation of functional neuroimaging.

Authors:  Agnès Aubert; Robert Costalat
Journal:  Neuroimage       Date:  2002-11       Impact factor: 6.556

3.  Advances in flux balance analysis.

Authors:  Kenneth J Kauffman; Purusharth Prakash; Jeremy S Edwards
Journal:  Curr Opin Biotechnol       Date:  2003-10       Impact factor: 9.740

4.  Monte Carlo sampling can be used to determine the size and shape of the steady-state flux space.

Authors:  Sharon J Wiback; Iman Famili; Harvey J Greenberg; Bernhard Ø Palsson
Journal:  J Theor Biol       Date:  2004-06-21       Impact factor: 2.691

5.  Comparison of network-based pathway analysis methods.

Authors:  Jason A Papin; Joerg Stelling; Nathan D Price; Steffen Klamt; Stefan Schuster; Bernhard O Palsson
Journal:  Trends Biotechnol       Date:  2004-08       Impact factor: 19.536

6.  Stoichiometric coupling of brain glucose metabolism and glutamatergic neuronal activity.

Authors:  N R Sibson; A Dhankhar; G F Mason; D L Rothman; K L Behar; R G Shulman
Journal:  Proc Natl Acad Sci U S A       Date:  1998-01-06       Impact factor: 11.205

7.  A spatially distributed computational model of brain cellular metabolism.

Authors:  Daniela Calvetti; Yougan Cheng; Erkki Somersalo
Journal:  J Theor Biol       Date:  2015-04-08       Impact factor: 2.691

8.  Astroglial contribution to brain energy metabolism in humans revealed by 13C nuclear magnetic resonance spectroscopy: elucidation of the dominant pathway for neurotransmitter glutamate repletion and measurement of astrocytic oxidative metabolism.

Authors:  Vincent Lebon; Kitt F Petersen; Gary W Cline; Jun Shen; Graeme F Mason; Sylvie Dufour; Kevin L Behar; Gerald I Shulman; Douglas L Rothman
Journal:  J Neurosci       Date:  2002-03-01       Impact factor: 6.167

Review 9.  Energy substrates for neurons during neural activity: a critical review of the astrocyte-neuron lactate shuttle hypothesis.

Authors:  Ching-Ping Chih; Eugene L Roberts
Journal:  J Cereb Blood Flow Metab       Date:  2003-11       Impact factor: 6.200

Review 10.  Insights from neuroenergetics into the interpretation of functional neuroimaging: an alternative empirical model for studying the brain's support of behavior.

Authors:  Robert G Shulman; Fahmeed Hyder; Douglas L Rothman
Journal:  J Cereb Blood Flow Metab       Date:  2014-08-27       Impact factor: 6.200

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