Literature DB >> 27145874

Single-Molecule FRET Spectroscopy and the Polymer Physics of Unfolded and Intrinsically Disordered Proteins.

Benjamin Schuler1, Andrea Soranno1, Hagen Hofmann1, Daniel Nettels1.   

Abstract

The properties of unfolded proteins have long been of interest because of their importance to the protein folding process. Recently, the surprising prevalence of unstructured regions or entirely disordered proteins under physiological conditions has led to the realization that such intrinsically disordered proteins can be functional even in the absence of a folded structure. However, owing to their broad conformational distributions, many of the properties of unstructured proteins are difficult to describe with the established concepts of structural biology. We have thus seen a reemergence of polymer physics as a versatile framework for understanding their structure and dynamics. An important driving force for these developments has been single-molecule spectroscopy, as it allows structural heterogeneity, intramolecular distance distributions, and dynamics to be quantified over a wide range of timescales and solution conditions. Polymer concepts provide an important basis for relating the physical properties of unstructured proteins to folding and function.

Entities:  

Keywords:  FRET; Förster resonance energy transfer; correlation spectroscopy; internal friction; protein dynamics; protein folding; single-molecule fluorescence

Mesh:

Substances:

Year:  2016        PMID: 27145874     DOI: 10.1146/annurev-biophys-062215-010915

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  80 in total

1.  A Unified De Novo Approach for Predicting the Structures of Ordered and Disordered Proteins.

Authors:  John J Ferrie; E James Petersson
Journal:  J Phys Chem B       Date:  2020-06-11       Impact factor: 2.991

2.  Fluorescence spectroscopy reveals N-terminal order in fibrillar forms of α-synuclein.

Authors:  Conor M Haney; E James Petersson
Journal:  Chem Commun (Camb)       Date:  2018-01-18       Impact factor: 6.222

Review 3.  Protein folding transition path times from single molecule FRET.

Authors:  Hoi Sung Chung; William A Eaton
Journal:  Curr Opin Struct Biol       Date:  2017-11-05       Impact factor: 6.809

4.  Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.

Authors:  Gustavo Fuertes; Niccolò Banterle; Kiersten M Ruff; Aritra Chowdhury; Davide Mercadante; Christine Koehler; Michael Kachala; Gemma Estrada Girona; Sigrid Milles; Ankur Mishra; Patrick R Onck; Frauke Gräter; Santiago Esteban-Martín; Rohit V Pappu; Dmitri I Svergun; Edward A Lemke
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-17       Impact factor: 11.205

Review 5.  To be disordered or not to be disordered: is that still a question for proteins in the cell?

Authors:  Kris Pauwels; Pierre Lebrun; Peter Tompa
Journal:  Cell Mol Life Sci       Date:  2017-06-13       Impact factor: 9.261

6.  Integrated view of internal friction in unfolded proteins from single-molecule FRET, contact quenching, theory, and simulations.

Authors:  Andrea Soranno; Andrea Holla; Fabian Dingfelder; Daniel Nettels; Dmitrii E Makarov; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205

7.  Three-Color Single-Molecule FRET and Fluorescence Lifetime Analysis of Fast Protein Folding.

Authors:  Janghyun Yoo; John M Louis; Irina V Gopich; Hoi Sung Chung
Journal:  J Phys Chem B       Date:  2018-10-10       Impact factor: 2.991

8.  AWSEM-IDP: A Coarse-Grained Force Field for Intrinsically Disordered Proteins.

Authors:  Hao Wu; Peter G Wolynes; Garegin A Papoian
Journal:  J Phys Chem B       Date:  2018-08-09       Impact factor: 2.991

Review 9.  Whole-Cell Models and Simulations in Molecular Detail.

Authors:  Michael Feig; Yuji Sugita
Journal:  Annu Rev Cell Dev Biol       Date:  2019-07-12       Impact factor: 13.827

10.  Comprehensive structural and dynamical view of an unfolded protein from the combination of single-molecule FRET, NMR, and SAXS.

Authors:  Mikayel Aznauryan; Leonildo Delgado; Andrea Soranno; Daniel Nettels; Jie-Rong Huang; Alexander M Labhardt; Stephan Grzesiek; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-26       Impact factor: 11.205

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