Literature DB >> 27142713

Validation of a clinical practice-based algorithm for the diagnosis of autosomal recessive cerebellar ataxias based on NGS identified cases.

Martial Mallaret1,2,3, Mathilde Renaud2,3,4, Claire Redin2, Nathalie Drouot2, Jean Muller2,5, Francois Severac6, Jean Louis Mandel2,5,7, Wahiba Hamza8, Traki Benhassine8, Lamia Ali-Pacha9, Meriem Tazir9,10, Alexandra Durr11,12, Marie-Lorraine Monin13, Cyril Mignot13, Perrine Charles14, Lionel Van Maldergem15, Ludivine Chamard16, Christel Thauvin-Robinet17, Vincent Laugel18, Lydie Burglen19, Patrick Calvas20, Marie-Céline Fleury3, Christine Tranchant2,3,4, Mathieu Anheim21,22,23, Michel Koenig24.   

Abstract

Establishing a molecular diagnosis of autosomal recessive cerebellar ataxias (ARCA) is challenging due to phenotype and genotype heterogeneity. We report the validation of a previously published clinical practice-based algorithm to diagnose ARCA. Two assessors performed a blind analysis to determine the most probable mutated gene based on comprehensive clinical and paraclinical data, without knowing the molecular diagnosis of 23 patients diagnosed by targeted capture of 57 ataxia genes and high-throughput sequencing coming from a 145 patients series. The correct gene was predicted in 61 and 78 % of the cases by the two assessors, respectively. There was a high inter-rater agreement [K = 0.85 (0.55-0.98) p < 0.001] confirming the algorithm's reproducibility. Phenotyping patients with proper clinical examination, imaging, biochemical investigations and nerve conduction studies remain crucial for the guidance of molecular analysis and to interpret next generation sequencing results. The proposed algorithm should be helpful for diagnosing ARCA in clinical practice.

Entities:  

Keywords:  Electromyography; Neurogenetics; Next generation sequencing; Recessive ataxia

Mesh:

Year:  2016        PMID: 27142713     DOI: 10.1007/s00415-016-8112-5

Source DB:  PubMed          Journal:  J Neurol        ISSN: 0340-5354            Impact factor:   4.849


  22 in total

1.  Nonsense mutations in CABC1/ADCK3 cause progressive cerebellar ataxia and atrophy.

Authors:  Mike Gerards; Bianca van den Bosch; Chantal Calis; Kees Schoonderwoerd; Klaartje van Engelen; Marina Tijssen; René de Coo; Anneke van der Kooi; Hubert Smeets
Journal:  Mitochondrion       Date:  2010-05-23       Impact factor: 4.160

2.  Mutations in SYNE1 lead to a newly discovered form of autosomal recessive cerebellar ataxia.

Authors:  François Gros-Louis; Nicolas Dupré; Patrick Dion; Michael A Fox; Sandra Laurent; Steve Verreault; Joshua R Sanes; Jean-Pierre Bouchard; Guy A Rouleau
Journal:  Nat Genet       Date:  2006-12-10       Impact factor: 38.330

3.  Autosomal recessive cerebellar ataxia type 3 due to ANO10 mutations: delineation and genotype-phenotype correlation study.

Authors:  Mathilde Renaud; Mathieu Anheim; Erik-Jan Kamsteeg; Martial Mallaret; Fanny Mochel; Sascha Vermeer; Nathalie Drouot; Jean Pouget; Claire Redin; Emmanuelle Salort-Campana; Hubertus P H Kremer; Corien C Verschuuren-Bemelmans; Jean Muller; Hans Scheffer; Alexandra Durr; Christine Tranchant; Michel Koenig
Journal:  JAMA Neurol       Date:  2014-10       Impact factor: 18.302

4.  CABC1 gene mutations cause ubiquinone deficiency with cerebellar ataxia and seizures.

Authors:  Julie Mollet; Agnès Delahodde; Valérie Serre; Dominique Chretien; Dimitri Schlemmer; Anne Lombes; Nathalie Boddaert; Isabelle Desguerre; Pascale de Lonlay; Hélène Ogier de Baulny; Arnold Munnich; Agnès Rötig
Journal:  Am J Hum Genet       Date:  2008-03       Impact factor: 11.025

5.  Targeted high-throughput sequencing for diagnosis of genetically heterogeneous diseases: efficient mutation detection in Bardet-Biedl and Alström syndromes.

Authors:  Claire Redin; Stéphanie Le Gras; Oussema Mhamdi; Véronique Geoffroy; Corinne Stoetzel; Marie-Claire Vincent; Pietro Chiurazzi; Didier Lacombe; Ines Ouertani; Florence Petit; Marianne Till; Alain Verloes; Bernard Jost; Habiba Bouhamed Chaabouni; Helene Dollfus; Jean-Louis Mandel; Jean Muller
Journal:  J Med Genet       Date:  2012-07-07       Impact factor: 6.318

6.  VaRank: a simple and powerful tool for ranking genetic variants.

Authors:  Véronique Geoffroy; Cécile Pizot; Claire Redin; Amélie Piton; Nasim Vasli; Corinne Stoetzel; André Blavier; Jocelyn Laporte; Jean Muller
Journal:  PeerJ       Date:  2015-03-03       Impact factor: 2.984

7.  Molecular and clinical study of a cohort of 110 Algerian patients with autosomal recessive ataxia.

Authors:  Wahiba Hamza; Lamia Ali Pacha; Tarik Hamadouche; Jean Muller; Nathalie Drouot; Farida Ferrat; Samira Makri; Malika Chaouch; Meriem Tazir; Michel Koenig; Traki Benhassine
Journal:  BMC Med Genet       Date:  2015-06-12       Impact factor: 2.103

8.  Autosomal recessive spastic ataxia of Charlevoix Saguenay (ARSACS): expanding the genetic, clinical and imaging spectrum.

Authors:  Matthis Synofzik; Anne S Soehn; Janina Gburek-Augustat; Julia Schicks; Kathrin N Karle; Rebecca Schüle; Tobias B Haack; Martin Schöning; Saskia Biskup; Sabine Rudnik-Schöneborn; Jan Senderek; Karl-Titus Hoffmann; Patrick MacLeod; Johannes Schwarz; Benjamin Bender; Stefan Krüger; Friedmar Kreuz; Peter Bauer; Ludger Schöls
Journal:  Orphanet J Rare Dis       Date:  2013-03-15       Impact factor: 4.123

9.  Next generation sequencing for molecular diagnosis of neurological disorders using ataxias as a model.

Authors:  Andrea H Németh; Alexandra C Kwasniewska; Stefano Lise; Ricardo Parolin Schnekenberg; Esther B E Becker; Katarzyna D Bera; Morag E Shanks; Lorna Gregory; David Buck; M Zameel Cader; Kevin Talbot; Rajith de Silva; Nicholas Fletcher; Rob Hastings; Sandeep Jayawant; Patrick J Morrison; Paul Worth; Malcolm Taylor; John Tolmie; Mary O'Regan; Ruth Valentine; Emily Packham; Julie Evans; Anneke Seller; Jiannis Ragoussis
Journal:  Brain       Date:  2013-09-11       Impact factor: 13.501

10.  Phenotypic variability in ARCA2 and identification of a core ataxic phenotype with slow progression.

Authors:  Cyril Mignot; Emmanuelle Apartis; Alexandra Durr; Charles Marques Lourenço; Perrine Charles; David Devos; Caroline Moreau; Pascale de Lonlay; Nathalie Drouot; Lydie Burglen; Nadine Kempf; Elsa Nourisson; Sandra Chantot-Bastaraud; Anne-Sophie Lebre; Marlène Rio; Yves Chaix; Eric Bieth; Emmanuel Roze; Isabelle Bonnet; Sandrine Canaple; Coralie Rastel; Alexis Brice; Agnès Rötig; Isabelle Desguerre; Christine Tranchant; Michel Koenig; Mathieu Anheim
Journal:  Orphanet J Rare Dis       Date:  2013-10-28       Impact factor: 4.123

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  5 in total

Review 1.  Clinical application of next generation sequencing in hereditary spinocerebellar ataxia: increasing the diagnostic yield and broadening the ataxia-spasticity spectrum. A retrospective analysis.

Authors:  Daniele Galatolo; Alessandra Tessa; Alessandro Filla; Filippo M Santorelli
Journal:  Neurogenetics       Date:  2017-12-06       Impact factor: 2.660

2.  Clinical, Biomarker, and Molecular Delineations and Genotype-Phenotype Correlations of Ataxia With Oculomotor Apraxia Type 1.

Authors:  Mathilde Renaud; Maria-Céu Moreira; Bondo Ben Monga; Diana Rodriguez; Rabab Debs; Perrine Charles; Malika Chaouch; Farida Ferrat; Chloé Laurencin; Laurent Vercueil; Martial Mallaret; Abderrahim M'Zahem; Lamia Ali Pacha; Meriem Tazir; Caroline Tilikete; Elisabeth Ollagnon; François Ochsner; Thierry Kuntzer; Hans H Jung; Jean-Marie Beis; Jean-Claude Netter; Atbin Djamshidian; Mattew Bower; Armand Bottani; Richard Walsh; Sinead Murphy; Thomas Reiley; Éric Bieth; Filip Roelens; Bwee Tien Poll-The; Charles Marques Lourenço; Laura Bannach Jardim; Rachel Straussberg; Pierre Landrieu; Emmanuel Roze; Stéphane Thobois; Jean Pouget; Claire Guissart; Cyril Goizet; Alexandra Dürr; Christine Tranchant; Michel Koenig; Mathieu Anheim
Journal:  JAMA Neurol       Date:  2018-04-01       Impact factor: 18.302

3.  Childhood-onset autosomal recessive ataxias: a cross-sectional study from Turkey.

Authors:  Hatice Mutlu-Albayrak; Emre Kırat; Gürkan Gürbüz
Journal:  Neurogenetics       Date:  2019-11-19       Impact factor: 2.660

4.  Genetic spectrum and clinical features in a cohort of Chinese patients with autosomal recessive cerebellar ataxias.

Authors:  Hao-Ling Cheng; Ya-Ru Shao; Yi Dong; Hai-Lin Dong; Lu Yang; Yin Ma; Ying Shen; Zhi-Ying Wu
Journal:  Transl Neurodegener       Date:  2021-10-18       Impact factor: 8.014

5.  Clinico-Genetic, Imaging and Molecular Delineation of COQ8A-Ataxia: A Multicenter Study of 59 Patients.

Authors:  Andreas Traschütz; Tommaso Schirinzi; Lucia Laugwitz; Nathan H Murray; Craig A Bingman; Selina Reich; Jan Kern; Anna Heinzmann; Gessica Vasco; Enrico Bertini; Ginevra Zanni; Alexandra Durr; Stefania Magri; Franco Taroni; Alessandro Malandrini; Jonathan Baets; Peter de Jonghe; Willem de Ridder; Matthieu Bereau; Stephanie Demuth; Christos Ganos; A Nazli Basak; Hasmet Hanagasi; Semra Hiz Kurul; Benjamin Bender; Ludger Schöls; Ute Grasshoff; Thomas Klopstock; Rita Horvath; Bart van de Warrenburg; Lydie Burglen; Christelle Rougeot; Claire Ewenczyk; Michel Koenig; Filippo M Santorelli; Mathieu Anheim; Renato P Munhoz; Tobias Haack; Felix Distelmaier; David J Pagliarini; Hélène Puccio; Matthis Synofzik
Journal:  Ann Neurol       Date:  2020-06-10       Impact factor: 11.274

  5 in total

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