Literature DB >> 27136968

Prebiotic synthesis of nucleic acids and their building blocks at the atomic level - merging models and mechanisms from advanced computations and experiments.

Judit E Šponer1, Rafał Szabla2, Robert W Góra3, A Marco Saitta4, Fabio Pietrucci4, Franz Saija5, Ernesto Di Mauro6, Raffaele Saladino7, Martin Ferus8, Svatopluk Civiš8, Jiří Šponer1.   

Abstract

The origin of life on Earth is one of the most fascinating questions of contemporary science. Extensive research in the past decades furnished diverse experimental proposals for the emergence of first informational polymers that could form the basis of the early terrestrial life. Side by side with the experiments, the fast development of modern computational chemistry methods during the last 20 years facilitated the use of in silico modelling tools to complement the experiments. Modern computations can provide unique atomic-level insights into the structural and electronic aspects as well as the energetics of key prebiotic chemical reactions. Many of these insights are not directly obtainable from the experimental techniques and the computations are thus becoming indispensable for proper interpretation of many experiments and for qualified predictions. This review illustrates the synergy between experiment and theory in the origin of life research focusing on the prebiotic synthesis of various nucleic acid building blocks and on the self-assembly of nucleotides leading to the first functional oligonucleotides.

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Year:  2016        PMID: 27136968     DOI: 10.1039/c6cp00670a

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  8 in total

1.  Formation of nucleobases in a Miller-Urey reducing atmosphere.

Authors:  Martin Ferus; Fabio Pietrucci; Antonino Marco Saitta; Antonín Knížek; Petr Kubelík; Ondřej Ivanek; Violetta Shestivska; Svatopluk Civiš
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-10       Impact factor: 11.205

Review 2.  RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.

Authors:  Jiří Šponer; Giovanni Bussi; Miroslav Krepl; Pavel Banáš; Sandro Bottaro; Richard A Cunha; Alejandro Gil-Ley; Giovanni Pinamonti; Simón Poblete; Petr Jurečka; Nils G Walter; Michal Otyepka
Journal:  Chem Rev       Date:  2018-01-03       Impact factor: 60.622

3.  Meteorite-catalyzed intermolecular trans-glycosylation produces nucleosides under proton beam irradiation.

Authors:  Bruno Mattia Bizzarri; Angelica Fanelli; Michail Kapralov; Eugene Krasavin; Raffaele Saladino
Journal:  RSC Adv       Date:  2021-05-27       Impact factor: 4.036

4.  Sulfidic Anion Concentrations on Early Earth for Surficial Origins-of-Life Chemistry.

Authors:  Sukrit Ranjan; Zoe R Todd; John D Sutherland; Dimitar D Sasselov
Journal:  Astrobiology       Date:  2018-04-08       Impact factor: 4.335

5.  High Energy Radical Chemistry Formation of HCN-rich Atmospheres on early Earth.

Authors:  Martin Ferus; Petr Kubelík; Antonín Knížek; Adam Pastorek; John Sutherland; Svatopluk Civiš
Journal:  Sci Rep       Date:  2017-07-24       Impact factor: 4.379

Review 6.  Progress in synthesizing protocells.

Authors:  O Duhan Toparlak; Sheref S Mansy
Journal:  Exp Biol Med (Maywood)       Date:  2018-12-03

7.  On the prebiotic selection of nucleotide anomers: A computational study.

Authors:  Lázaro A M Castanedo; Chérif F Matta
Journal:  Heliyon       Date:  2022-06-09

Review 8.  A Computational Quantum-Based Perspective on the Molecular Origins of Life's Building Blocks.

Authors:  Gabriele Amante; Judit E Sponer; Jiri Sponer; Franz Saija; Giuseppe Cassone
Journal:  Entropy (Basel)       Date:  2022-07-22       Impact factor: 2.738

  8 in total

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