Literature DB >> 27134162

Promoter Hypomethylation and Expression Is Conserved in Mouse Chronic Lymphocytic Leukemia Induced by Decreased or Inactivated Dnmt3a.

Staci L Haney1, G Michael Upchurch2, Jana Opavska2, David Klinkebiel3, Ryan A Hlady4, Abhinav Suresh2, Samuel J Pirruccello5, Vipul Shukla1, Runqing Lu1, Stefan Costinean6, Angie Rizzino7, Adam R Karpf2, Shantaram Joshi8, Patrick Swanson9, Rene Opavsky10.   

Abstract

DNA methyltransferase 3a (DNMT3A) catalyzes the formation of 5-methyl-cytosine in mammalian genomic DNA, and it is frequently mutated in human hematologic malignancies. Bi-allelic loss of Dnmt3a in mice results in leukemia and lymphoma, including chronic lymphocytic leukemia (CLL). Here, we investigate whether mono-allelic loss of Dnmt3a is sufficient to induce disease. We show that, by 16 months of age, 65% of Dnmt3a(+/-) mice develop a CLL-like disease, and 15% of mice develop non-malignant myeloproliferation. Genome-wide methylation analysis reveals that reduced Dnmt3a levels induce promoter hypomethylation at similar loci in Dnmt3a(+/-) and Dnmt3a(Δ/Δ) CLL, suggesting that promoters are particularly sensitive to Dnmt3a levels. Gene expression analysis identified 26 hypomethylated and overexpressed genes common to both Dnmt3a(+/-) and Dnmt3a(Δ/Δ) CLL as putative oncogenic drivers. Our data provide evidence that Dnmt3a is a haplo-insufficient tumor suppressor in CLL and highlights the importance of deregulated molecular events in disease pathogenesis.
Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27134162      PMCID: PMC4864108          DOI: 10.1016/j.celrep.2016.04.004

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  34 in total

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Authors:  X N Gao; F Yan; J Lin; L Gao; X L Lu; S C Wei; N Shen; J X Pang; Q Y Ning; Y Komeno; A L Deng; Y H Xu; J L Shi; Y H Li; D E Zhang; C Nervi; S J Liu; L Yu
Journal:  Leukemia       Date:  2015-03-02       Impact factor: 11.528

Review 2.  Next generation sequencing based approaches to epigenomics.

Authors:  Martin Hirst; Marco A Marra
Journal:  Brief Funct Genomics       Date:  2010-12       Impact factor: 4.241

3.  Dnmt3a is essential for hematopoietic stem cell differentiation.

Authors:  Grant A Challen; Deqiang Sun; Mira Jeong; Min Luo; Jaroslav Jelinek; Jonathan S Berg; Christoph Bock; Aparna Vasanthakumar; Hongcang Gu; Yuanxin Xi; Shoudan Liang; Yue Lu; Gretchen J Darlington; Alexander Meissner; Jean-Pierre J Issa; Lucy A Godley; Wei Li; Margaret A Goodell
Journal:  Nat Genet       Date:  2011-12-04       Impact factor: 38.330

4.  Loss of Dnmt3b function upregulates the tumor modifier Ment and accelerates mouse lymphomagenesis.

Authors:  Ryan A Hlady; Slavomira Novakova; Jana Opavska; David Klinkebiel; Staci L Peters; Juraj Bies; Jay Hannah; Javeed Iqbal; Kristi M Anderson; Hollie M Siebler; Lynette M Smith; Timothy C Greiner; Dhundy Bastola; Shantaram Joshi; Oksana Lockridge; Melanie A Simpson; Dean W Felsher; Kay-Uwe Wagner; Wing C Chan; Judith K Christman; Rene Opavsky
Journal:  J Clin Invest       Date:  2011-12-01       Impact factor: 14.808

5.  Clinical utility of microarray-based gene expression profiling in the diagnosis and subclassification of leukemia: report from the International Microarray Innovations in Leukemia Study Group.

Authors:  Torsten Haferlach; Alexander Kohlmann; Lothar Wieczorek; Giuseppe Basso; Geertruy Te Kronnie; Marie-Christine Béné; John De Vos; Jesus M Hernández; Wolf-Karsten Hofmann; Ken I Mills; Amanda Gilkes; Sabina Chiaretti; Sheila A Shurtleff; Thomas J Kipps; Laura Z Rassenti; Allen E Yeoh; Peter R Papenhausen; Wei-Min Liu; P Mickey Williams; Robin Foà
Journal:  J Clin Oncol       Date:  2010-04-20       Impact factor: 44.544

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Authors:  Allison Mayle; Liubin Yang; Benjamin Rodriguez; Ting Zhou; Edmund Chang; Choladda V Curry; Grant A Challen; Wei Li; David Wheeler; Vivienne I Rebel; Margaret A Goodell
Journal:  Blood       Date:  2015-01-22       Impact factor: 22.113

7.  Enforced differentiation of Dnmt3a-null bone marrow leads to failure with c-Kit mutations driving leukemic transformation.

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Journal:  Blood       Date:  2015-01-22       Impact factor: 22.113

Review 8.  Epigenetic alterations in a murine model for chronic lymphocytic leukemia.

Authors:  Shih-Shih Chen; Mara H Sherman; Erin Hertlein; Amy J Johnson; Michael A Teitell; John C Byrd; Christoph Plass
Journal:  Cell Cycle       Date:  2009-11-15       Impact factor: 4.534

9.  The identification of microRNAs in a genomically unstable region of human chromosome 8q24.

Authors:  Konrad Huppi; Natalia Volfovsky; Timothy Runfola; Tamara L Jones; Mark Mackiewicz; Scott E Martin; J Frederic Mushinski; Robert Stephens; Natasha J Caplen
Journal:  Mol Cancer Res       Date:  2008-02       Impact factor: 5.852

10.  Pvt1-encoded microRNAs in oncogenesis.

Authors:  Gabriele B Beck-Engeser; Amy M Lum; Konrad Huppi; Natasha J Caplen; Bruce B Wang; Matthias Wabl
Journal:  Retrovirology       Date:  2008-01-14       Impact factor: 4.602

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  19 in total

1.  ROR1-targeted delivery of miR-29b induces cell cycle arrest and therapeutic benefit in vivo in a CLL mouse model.

Authors:  Chi-Ling Chiang; Swagata Goswami; Frank W Frissora; Zhiliang Xie; Pearlly S Yan; Ralf Bundschuh; Logan A Walker; Xiaomeng Huang; Rajeswaran Mani; Xiaokui M Mo; Sivasubramanian Baskar; Christoph Rader; Mitch A Phelps; Guido Marcucci; John C Byrd; L James Lee; Natarajan Muthusamy
Journal:  Blood       Date:  2019-05-31       Impact factor: 22.113

Review 2.  Mature lymphoid malignancies: origin, stem cells, and chronicity.

Authors:  Simon Husby; Kirsten Grønbæk
Journal:  Blood Adv       Date:  2017-11-28

3.  Haploinsufficiency for DNA methyltransferase 3A predisposes hematopoietic cells to myeloid malignancies.

Authors:  Christopher B Cole; David A Russler-Germain; Shamika Ketkar; Angela M Verdoni; Amanda M Smith; Celia V Bangert; Nichole M Helton; Mindy Guo; Jeffery M Klco; Shelly O'Laughlin; Catrina Fronick; Robert Fulton; Gue Su Chang; Allegra A Petti; Christopher A Miller; Timothy J Ley
Journal:  J Clin Invest       Date:  2017-09-05       Impact factor: 14.808

4.  Activation of Notch and Myc Signaling via B-cell-Restricted Depletion of Dnmt3a Generates a Consistent Murine Model of Chronic Lymphocytic Leukemia.

Authors:  Anat Biran; Shanye Yin; Helene Kretzmer; Elisa Ten Hacken; Salma Parvin; Fabienne Lucas; Mohamed Uduman; Catherine Gutierrez; Nathan Dangle; Leah Billington; Fara Faye Regis; Laura Z Rassenti; Arman Mohammad; Gabriela Brunsting Hoffmann; Kristen Stevenson; Mei Zheng; Elizabeth Witten; Stacey M Fernandes; Eugen Tausch; Clare Sun; Stephan Stilgenbauer; Jennifer R Brown; Thomas J Kipps; John C Aster; Andreas Gnirke; Donna S Neuberg; Anthony Letai; Lili Wang; Ruben D Carrasco; Alexander Meissner; Catherine J Wu
Journal:  Cancer Res       Date:  2021-10-22       Impact factor: 13.312

5.  B-cell tumor development in Tet2-deficient mice.

Authors:  Enguerran Mouly; Hussein Ghamlouch; Veronique Della-Valle; Laurianne Scourzic; Cyril Quivoron; Damien Roos-Weil; Patrycja Pawlikowska; Véronique Saada; M'Boyba K Diop; Cécile K Lopez; Michaela Fontenay; Philippe Dessen; Ivo P Touw; Thomas Mercher; Said Aoufouchi; Olivier A Bernard
Journal:  Blood Adv       Date:  2018-03-27

Review 6.  Understanding CLL biology through mouse models of human genetics.

Authors:  Elisa Ten Hacken; Catherine J Wu
Journal:  Blood       Date:  2021-12-23       Impact factor: 25.476

7.  Epigenetic restriction of extraembryonic lineages mirrors the somatic transition to cancer.

Authors:  Zachary D Smith; Jiantao Shi; Hongcang Gu; Julie Donaghey; Kendell Clement; Davide Cacchiarelli; Andreas Gnirke; Franziska Michor; Alexander Meissner
Journal:  Nature       Date:  2017-09-20       Impact factor: 49.962

8.  Chinese Medicine Regulates DNA Methylation to Treat Haematological Malignancies: A New Paradigm of "State-Target Medicine".

Authors:  Feng-Lin Shen; Yan-Na Zhao; Xiao-Ling Yu; Bo-Lin Wang; Xiao-Long Wu; Gao-Chen Lan; Rui-Lan Gao
Journal:  Chin J Integr Med       Date:  2021-07-09       Impact factor: 1.978

Review 9.  Aberrant Promoter Hypomethylation in CLL: Does It Matter for Disease Development?

Authors:  Garland Michael Upchurch; Staci L Haney; Rene Opavsky
Journal:  Front Oncol       Date:  2016-08-11       Impact factor: 6.244

10.  Loss of Dnmt3a induces CLL and PTCL with distinct methylomes and transcriptomes in mice.

Authors:  Staci L Haney; Garland M Upchurch; Jana Opavska; David Klinkebiel; Adams Kusi Appiah; Lynette M Smith; Tayla B Heavican; Javeed Iqbal; Shantaram Joshi; Rene Opavsky
Journal:  Sci Rep       Date:  2016-09-28       Impact factor: 4.379

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