| Literature DB >> 27132144 |
Thomas Pickardt1, Eva Niggemeyer2, Ulrike M M Bauer3, Hashim Abdul-Khaliq4.
Abstract
Congenital heart disease (CHD) is the most frequent birth defect (0.8%-1% of all live births). Due to the advance in prenatal and postnatal early diagnosis and treatment, more than 90% of these patients survive into adulthood today. However, several mid- and long-term morbidities are dominating the follow-up of these patients. Due to the rarity and heterogeneity of the phenotypes of CHD, multicenter registry-based studies are required. The CHD-Biobank was established in 2009 with the aim to collect DNA from patients and their parents (trios) or from affected families, as well as cardiovascular tissues from patients undergoing corrective heart surgery for cardiovascular malformations. Clinical/phenotype data are matched to the International Paediatric and Congenital Cardiac Code (IPCCC) and the International Statistical Classification of Diseases and Related Health Problems 10th Revision (ICD-10). The DNA collection currently comprises samples from approximately 4200 participants with a wide range of CHD phenotypes. The collection covers about 430 trios and 120 families with more than one affected member. The cardiac tissue collection comprises 1143 tissue samples from 556 patients after open heart surgery. The CHD-Biobank provides a comprehensive basis for research in the field of CHD with high standards of data privacy, IT management, and sample logistics.Entities:
Keywords: Biorepository; Congenital heart defects; DNA; Genetic research; Multi-center research
Mesh:
Substances:
Year: 2016 PMID: 27132144 PMCID: PMC4996858 DOI: 10.1016/j.gpb.2016.03.003
Source DB: PubMed Journal: Genomics Proteomics Bioinformatics ISSN: 1672-0229 Impact factor: 7.691
Figure 1Structure of CNCHD and NRCHD
Comparison between ICD-10 and IPCCC for the classification of congenital heart defects
| Main diagnosis | 70 | 206 |
| Congenital cardiac secondary diagnosis | 69 | 204 |
| Acquired cardiac secondary diagnosis | 108 | 218 |
| Hereditary, fetal and neonatal diagnosis | 42 | 55 |
| Extracardiac diagnosis | All available codes | N/A |
| Cardiac operations | N/A | 299 |
| Cardiac interventions | N/A | 66 |
Note: ICD-10, International Statistical Classification of Diseases and Related Health Problems 10th Revision; IPCCC, International Paediatric and Congenital Cardiac Code. ICD-10 codes overlap between different categories.
Figure 2Tissue-sample collection kit
The complete list of heart tissue types can be found in Figure 5.
Outline of the current CHD-Biobank DNA collection
| Donors | Affected donors | 2928 |
| Non-affected donors | 1674 | |
| Families with | 2 affected members | 102 |
| 3 affected members | 24 | |
| 4 affected members | 3 | |
| Trios (patient plus healthy parents) | 453 | |
| Enrolled twin pairs | Monozygotic | 15 |
| Dizygotic | 19 | |
| Status still unknown | 13 | |
Figure 3Age distribution of the affected donors
The age here refers to the documented age when samples were taken.
Distribution of the affected donors by diagnosis groups
| 1 | Aortic coarctation | 243 |
| 2 | Aortic valve abnormalities | 201 |
| 3 | Atrioventricular septal defect | 177 |
| 4 | Common arterial trunk | 32 |
| 5 | Complete transposition of great arteries | 105 |
| 6 | Congenitally corrected transposition of great arteries | 61 |
| 7 | Discordant VA connections | 55 |
| 8 | Double inlet left ventricle | 73 |
| 9 | Double outlet right ventricle | 89 |
| 10 | Ebstein’s malformation of tricuspid valve | 49 |
| 11 | Hypoplastic left heart syndrome | 189 |
| 12 | Interatrial communication | 345 |
| 13 | Interrupted aortic arch | 11 |
| 14 | MARFAN Syndrome | 11 |
| 15 | Mitral atresia | 9 |
| 16 | Mitral valve abnormalities | 21 |
| 17 | Partially anomalous pulmonary venous connection(s) | 45 |
| 18 | Patent arterial duct | 115 |
| 19 | Primary Cardiomyopathy | 80 |
| 20 | Pulmonary atresia + intact ventricular septum | 40 |
| 21 | Pulmonary atresia + ventricular septal defect | 124 |
| 22 | Pulmonary valve abnormalities | 79 |
| 23 | Shone Complex | 9 |
| 24 | Subaortic stenosis | 12 |
| 25 | Tetralogy of Fallot | 279 |
| 26 | Total anomalous pulmonary venous connection | 13 |
| 27 | Tricuspid atresia | 80 |
| 28 | Ventricular septal defect | 227 |
| 29 | Other | 154 |
Figure 4Distribution of the affected donors born with additional syndromes/disorders
Figure 5Type and number of tissue samples from heart surgery
Cooperative projects and partner institutions
| Academic Medical Centre Amsterdam, the Netherlands; Institute of Human Genetics, Newcastle University, UK; Heart Repair-Consortium | DNA | Complex CHD | 78 | Completed | |
| Department of Pediatric Cardiology, Friedrich-Alexander-Universität Erlangen-Nürnberg | DNA | CM | 62 | Completed | |
| Department of Congenital Heart Disease and Pediatric Cardiology, University Hospital of Schleswig-Holstein, Campus Kiel, and further international partner institutions | DNA | CM | 16 | Completed | |
| Department of Cardiovascular Genetics, Experimental and Clinical Research Center, Charité – Universitätsmedizin Berlin and Max Delbrück Center (MDC) for Molecular Medicine, Berlin, Germany | DNA | TOF families | 35 | Completed | |
| Wellcome Trust Sanger Institute, Cambridge/UK, and further international partner institutions | DNA | AVSD | 18 | Completed | |
| Department of Pediatric Cardiology, Friedrich-Alexander-Universität Erlangen-Nürnberg | DNA | CoA | 83 | Completed | |
| Institute of Biochemistry and Molecular Genetics, Ulm University | DNA | Heterotaxy | 74 | Completed | Manuscript submitted |
| Department of Cardiology and Pneumology, Göttingen University | DNA | HLHS | 72 | In progress | |
| Department of Pediatric Cardiology and Critical Care, Hannover Medical School | Heart tissue | TOF | 36 | In progress | |
| Wellcome Trust Sanger Institute, Cambridge/UK and further international partner institutions | DNA | LVOTO | 1147 | Completed | Manuscript submitted |
Note: CHD, congenital heart disease; CM, primary cardiomyopathy; TOF, tetralogy of Fallot; AVSD, atrioventricular septal defect; CoA, aortic coarctation; HLHS, hypoplastic left heart syndrome; LVOTO, left ventricular outflow tract obstruction.