Literature DB >> 27132126

Targeting the untargeted in molecular phenomics with structurally-selective ion mobility-mass spectrometry.

Jody Christopher May1, Randi Lee Gant-Branum1, John Allen McLean2.   

Abstract

Systems-wide molecular phenomics is rapidly expanding through technological advances in instrumentation and bioinformatics. Strategies such as structural mass spectrometry, which utilizes size and shape measurements with molecular weight, serve to characterize the sum of molecular expression in biological contexts, where broad-scale measurements are made that are interpreted through big data statistical techniques to reveal underlying patterns corresponding to phenotype. The data density, data dimensionality, data projection, and data interrogation are all critical aspects of these approaches to turn data into salient information. Untargeted molecular phenomics is already having a dramatic impact in discovery science from drug discovery to synthetic biology. It is evident that these emerging techniques will integrate closely in broad efforts aimed at precision medicine.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27132126      PMCID: PMC4899109          DOI: 10.1016/j.copbio.2016.04.013

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  51 in total

1.  Systems biology and new technologies enable predictive and preventative medicine.

Authors:  Leroy Hood; James R Heath; Michael E Phelps; Biaoyang Lin
Journal:  Science       Date:  2004-10-22       Impact factor: 47.728

2.  Profiling and imaging of tissues by imaging ion mobility-mass spectrometry.

Authors:  John A McLean; Whitney B Ridenour; Richard M Caprioli
Journal:  J Mass Spectrom       Date:  2007-08       Impact factor: 1.982

3.  Structuring Microbial Metabolic Responses to Multiplexed Stimuli via Self-Organizing Metabolomics Maps.

Authors:  Cody R Goodwin; Brett C Covington; Dagmara K Derewacz; C Ruth McNees; John P Wikswo; John A McLean; Brian O Bachmann
Journal:  Chem Biol       Date:  2015-04-30

4.  On-tissue protein identification and imaging by MALDI-ion mobility mass spectrometry.

Authors:  Jonathan Stauber; Luke MacAleese; Julien Franck; Emmanuelle Claude; Marten Snel; Basak Kükrer Kaletas; Ingrid M V D Wiel; Maxence Wisztorski; Isabelle Fournier; Ron M A Heeren
Journal:  J Am Soc Mass Spectrom       Date:  2009-09-29       Impact factor: 3.109

5.  Combined elemental and biomolecular mass spectrometry imaging for probing the inventory of tissue at a micrometer scale.

Authors:  Andreas Matusch; Larissa S Fenn; Candan Depboylu; Martin Klietz; Sven Strohmer; John A McLean; J Sabine Becker
Journal:  Anal Chem       Date:  2012-03-20       Impact factor: 6.986

6.  PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations.

Authors:  Joshua C Denny; Marylyn D Ritchie; Melissa A Basford; Jill M Pulley; Lisa Bastarache; Kristin Brown-Gentry; Deede Wang; Dan R Masys; Dan M Roden; Dana C Crawford
Journal:  Bioinformatics       Date:  2010-03-24       Impact factor: 6.937

7.  Investigating carbohydrate isomers by IMS-CID-IMS-MS: precursor and fragment ion cross-sections.

Authors:  M M Gaye; R Kurulugama; D E Clemmer
Journal:  Analyst       Date:  2015-08-26       Impact factor: 4.616

8.  Glia co-culture with neurons in microfluidic platforms promotes the formation and stabilization of synaptic contacts.

Authors:  Mingjian Shi; Devi Majumdar; Yandong Gao; Bryson M Brewer; Cody R Goodwin; John A McLean; Deyu Li; Donna J Webb
Journal:  Lab Chip       Date:  2013-08-07       Impact factor: 6.799

9.  Characterizing ion mobility and collision cross section of fatty acids using electrospray ion mobility mass spectrometry.

Authors:  Fang Zhang; Su Guo; Manyu Zhang; Zhixu Zhang; Yinlong Guo
Journal:  J Mass Spectrom       Date:  2015-07       Impact factor: 1.982

10.  Ion mobility derived collision cross sections to support metabolomics applications.

Authors:  Giuseppe Paglia; Jonathan P Williams; Lochana Menikarachchi; J Will Thompson; Richard Tyldesley-Worster; Skarphédinn Halldórsson; Ottar Rolfsson; Arthur Moseley; David Grant; James Langridge; Bernhard O Palsson; Giuseppe Astarita
Journal:  Anal Chem       Date:  2014-03-28       Impact factor: 6.986

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  15 in total

1.  Evaluating Separation Selectivity and Collision Cross Section Measurement Reproducibility in Helium, Nitrogen, Argon, and Carbon Dioxide Drift Gases for Drift Tube Ion Mobility-Mass Spectrometry.

Authors:  Caleb B Morris; Jody C May; Katrina L Leaptrot; John A McLean
Journal:  J Am Soc Mass Spectrom       Date:  2019-03-18       Impact factor: 3.109

2.  Rapid Characterization of Per- and Polyfluoroalkyl Substances (PFAS) by Ion Mobility Spectrometry-Mass Spectrometry (IMS-MS).

Authors:  James N Dodds; Zachary R Hopkins; Detlef R U Knappe; Erin S Baker
Journal:  Anal Chem       Date:  2020-02-24       Impact factor: 6.986

Review 3.  Fundamentals of Ion Mobility-Mass Spectrometry for the Analysis of Biomolecules.

Authors:  Caleb B Morris; James C Poland; Jody C May; John A McLean
Journal:  Methods Mol Biol       Date:  2020

Review 4.  Coupling Front-End Separations, Ion Mobility Spectrometry, and Mass Spectrometry For Enhanced Multidimensional Biological and Environmental Analyses.

Authors:  Xueyun Zheng; Roza Wojcik; Xing Zhang; Yehia M Ibrahim; Kristin E Burnum-Johnson; Daniel J Orton; Matthew E Monroe; Ronald J Moore; Richard D Smith; Erin S Baker
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2017-02-23       Impact factor: 10.745

5.  Automated flow injection method for the high precision determination of drift tube ion mobility collision cross sections.

Authors:  Charles M Nichols; Jody C May; Stacy D Sherrod; John A McLean
Journal:  Analyst       Date:  2018-03-26       Impact factor: 4.616

6.  Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Contaminant Ions in Complex Samples.

Authors:  Kristin E Burnum-Johnson; Xueyun Zheng; James N Dodds; Jeremy Ash; Denis Fourches; Carrie D Nicora; Jason P Wendler; Thomas O Metz; Katrina M Waters; Janet K Jansson; Richard D Smith; Erin S Baker
Journal:  Trends Analyt Chem       Date:  2019-04-29       Impact factor: 12.296

7.  Utilizing ion mobility spectrometry and mass spectrometry for the analysis of polycyclic aromatic hydrocarbons, polychlorinated biphenyls, polybrominated diphenyl ethers and their metabolites.

Authors:  Xueyun Zheng; Kevin T Dupuis; Noor A Aly; Yuxuan Zhou; Francesca B Smith; Keqi Tang; Richard D Smith; Erin S Baker
Journal:  Anal Chim Acta       Date:  2018-03-02       Impact factor: 6.558

Review 8.  How close are we to complete annotation of metabolomes?

Authors:  Mark R Viant; Irwin J Kurland; Martin R Jones; Warwick B Dunn
Journal:  Curr Opin Chem Biol       Date:  2017-01-21       Impact factor: 8.822

9.  Collision Cross Section Conformational Analyses of Bile Acids via Ion Mobility-Mass Spectrometry.

Authors:  James C Poland; Katrina L Leaptrot; Stacy D Sherrod; Charles Robb Flynn; John A McLean
Journal:  J Am Soc Mass Spectrom       Date:  2020-06-29       Impact factor: 3.109

10.  Multidimensional Separations of Intact Phase II Steroid Metabolites Utilizing LC-Ion Mobility-HRMS.

Authors:  Don E Davis; Katrina L Leaptrot; David C Koomen; Jody C May; Gustavo de A Cavalcanti; Monica C Padilha; Henrique M G Pereira; John A McLean
Journal:  Anal Chem       Date:  2021-07-28       Impact factor: 8.008

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